Johri, P., Aquadro, C. F., Beaumont, M., Charlesworth, B., Excoffier, L., Eyre-Walker, A., … & Jensen, J. D. (2022). Recommendations for improving statistical inference in population genomics. PLoS biology, 20(5), e3001669.

Research article

Johri, P., Aquadro, C. F., Beaumont, M., Charlesworth, B., Excoffier, L., Eyre-Walker, A., … & Jensen, J. D. (2022). Recommendations for improving statistical inference in population genomics. PLoS biology, 20(5), e3001669.

Pan, J., Li, W., Ni, J., Wu, K., Konigsberg, I., Rivera, C. E., … & Long, H. (2022). Rates of mutations and transcript errors in the foodborne pathogen Salmonella enterica subsp. enterica. Molecular biology and evolution, 39(4), msac081.

Johri, P., Gout, J. F., Doak, T. G., & Lynch, M. (2022). A population-genetic lens into the process of gene loss following whole-genome duplication. Molecular biology and evolution, 39(6), msac118.

Frasch, W. D., Bukhari, Z. A., & Yanagisawa, S. (2022). F1FO ATP synthase molecular motor mechanisms. Frontiers in microbiology, 13, 965620.

Yanagisawa, S., & Frasch, W. D. (2021). pH-dependent 11 F1FO ATP synthase sub-steps reveal insight into the FO torque generating mechanism. Elife, 10, e70016.

Richter, D. J., Berney, C., Strassert, J. F., Poh, Y. P., Herman, E. K., Muñoz-Gómez, S. A., … & de Vargas, C. (2022). EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes. Peer Community Journal, 2.

Singh, R. P., Poh, Y. P., Sinha, S. D., & Wideman, J. G. (2023). Evolutionary History of Oxysterol-Binding Proteins Reveals Complex History of Duplication and Loss in Animals and Fungi. Contact, 6, 25152564221150428.

Macher, J. N., Coots, N. L., Poh, Y. P., Girard, E. B., Langerak, A., Muñoz-Gómez, S. A., … & Wideman, J. G. (2023). Single-cell genomics reveals the divergent mitochondrial genomes of Retaria (Foraminifera and Radiolaria). Mbio, 14(2), e00302-23.

Sinha, S. D., & Wideman, J. G. (2023). The persistent homology of mitochondrial ATP synthases. Iscience, 26(5).

Brettner, L., Eder, R., Schmidlin, K., & Geiler‐Samerotte, K. (2024). An ultra high‐throughput, massively multiplexable, single‐cell RNA‐seq platform in yeasts. Yeast, 41(4), 242-255.