Publications

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2016

  1. Zhao Z, Fu J, Dhakal S, Johnson-Buck A, Liu M, Zhang T, Woodbury NW, Liu Y, Walter NG, Yan H. Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion. Nat Commun. 2016 Feb 10;7:10619. doi: 10.1038/ncomms10619. PubMed PMID: 26861509; PubMed Central PMCID: PMC4749968.

2015

  1. Wang, Wei; Woodbury, Neal W. Unstructured interactions between peptides and proteins: Exploring the role of sequence motifs in affinity and specificity. Acta Biomaterialia (2015).


2014

  1. Dutta PK, Levenberg S, Loskutov A, Jun D, Saer R, Beatty JT, Lin S, Liu Y, Woodbury NW, Yan H. A DNA-directed light-harvesting/reaction center system. J Am Chem Soc. 2014 Nov 26;136(47):16618-25. doi: 10.1021/ja509018g. Epub 2014 Nov 12. PubMed PMID: 25340853.

  2. Wang W, Woodbury NW. Unstructured interactions between peptides and proteins: exploring the role of sequence motifs in affinity and specificity. Acta Biomater. 2015 Jan;11:88-95. doi: 10.1016/j.actbio.2014.09.039. Epub 2014 Oct 8. PubMed PMID: 25266506.

  3. Stafford P, Cichacz Z, Woodbury NW, Johnston SA. Immunosignature system for diagnosis of cancer. Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):E3072-80. doi: 10.1073/pnas.1409432111. Epub 2014 Jul 14. PubMed PMID: 25024171; PubMed Central PMCID: PMC4121770.

  4. Driscoll B, Lunceford C, Lin S, Woronowicz K, Niederman RA, Woodbury NW. Energy transfer properties of Rhodobacter sphaeroides chromatophores during adaptation to low light intensity. Phys Chem Chem Phys. 2014 Aug 28;16(32):17133-41. doi: 10.1039/c4cp01981d. PubMed PMID: 25008288.

  5. Fu J, Yang YR, Johnson-Buck A, Liu M, Liu Y, Walter NG, Woodbury NW, Yan H. Multi-enzyme complexes on DNA scaffolds capable of substrate channelling with an artificial swinging arm. Nat Nanotechnol. 2014 Jul;9(7):531-6. doi: 10.1038/nnano.2014.100. Epub 2014 May 25. PubMed PMID: 24859813.

  6. Dutta PK, Lin S, Loskutov A, Levenberg S, Jun D, Saer R, Beatty JT, Liu Y, Yan H, Woodbury NW. Reengineering the optical absorption cross-section of photosynthetic reaction centers. J Am Chem Soc. 2014 Mar 26;136(12):4599-604. doi: 10.1021/ja411843k. Epub 2014 Mar 13. PubMed PMID: 24568563.

  7. Saer RG, Pan J, Hardjasa A, Lin S, Rosell F, Mauk AG, Woodbury NW, Murphy ME, Beatty JT. Structural and kinetic properties of Rhodobacter sphaeroides photosynthetic reaction centers containing exclusively Zn-coordinated bacteriochlorophyll as bacteriochlorin cofactors. Biochim Biophys Acta. 2014 Mar;1837(3):366-74. doi: 10.1016/j.bbabio.2013.11.015. Epub 2013 Dec 5. PubMed PMID: 24316146.


2012

  1. Wang W, Woodbury NW. Selective protein-peptide interactions at surfaces. Acta Biomater. 2014 Feb;10(2):761-8. doi: 10.1016/j.actbio.2013.10.025. Epub 2013 Oct 29. PubMed PMID: 24184177.

  2. Liu M, Fu J, Hejesen C, Yang Y, Woodbury NW, Gothelf K, Liu Y, Yan H. A DNA tweezer-actuated enzyme nanoreactor. Nat Commun. 2013;4:2127. doi: 10.1038/ncomms3127. PubMed PMID: 23820332.

  3. Guo Z, Lin S, Woodbury NW. Utilizing the dynamic stark shift as a probe for dielectric relaxation in photosynthetic reaction centers during charge separation. J Phys Chem B. 2013 Sep 26;117(38):11383-90. doi: 10.1021/jp4037843. Epub 2013 Jul 10. PubMed PMID: 23799254.

  4. Pan J, Saer RG, Lin S, Guo Z, Beatty JT, Woodbury NW. The protein environment of the bacteriopheophytin anion modulates charge separation and charge recombination in bacterial reaction centers. J Phys Chem B. 2013 Jun 20;117(24):7179-89. doi: 10.1021/jp400132k. Epub 2013 Jun 10. PubMed PMID: 23688348.


2012

  1. H Wang, Y Hao, J Ying, S Lin, NW Woodbury. Role of Protein Dynamics in Guiding Electron-Transfer Pathways in Reaction Centers from Rhodobacter sphaeroides. Journal of Physical Chemistry B (2012).

  2. H Wang, Y Jiang, Y Hao, S Lin, NW Woodbury. Role of Protein Dynamics in Guilding Electron-Transfer Pathways in Reaction Centers from Rhodobacter sphaeroides. J. Phys. Chem. B (2012).

  3. J Fu, M Liu, Y Liu, NW Woodbury and H Yan. Interenzyme Substrate Diffusion for an Enzyme Cascade Organized on Spatially Addressable DNA Nanostructures. J. Am. Chem. Soc (2012).

  4. J Pan, S Lin, NW Woodbury. Bacteriochlorophyll Excited-State Quenching Pathways in Bacterial Reaction Centers with the Primary Donor Oxidized. J Phys Chem B (2012).

  5. Z Guo, S Lin, J Pan, N Woodbury. Protein Dielectric Environment Modulates the Electron Transfer Pathway in Photosynthetic Reaction Centers. Biophysical Journal (2012).

  6. J Pan, S Lin, JP Allen, JC Williams, HA Frank, NW Woodbury. Carotenoid Excited-State Properties in Photosynthetic Purple Bacterial Reaction Centers: Effects of the Protein Environment. JOURNAL OF PHYSICAL CHEMISTRY B (2011).

  7. JL Fu, J Reinhold, NW Woodbury. Peptide-Modified Surfaces for Enzyme Immobilization. PLOS ONE (2011).

  8. Z Guo, S Lin, YY Xin, HY Wang, RE Blankenship, NW Woodbury. Comparing the Temperature Dependence of Photosynthetic Electron Transfer in Chloroflexus aurantiacus and Rhodobactor sphaeroides Reaction Centers. JOURNAL OF PHYSICAL CHEMISTRY B (2011).


2010

  1. Greving MP, Kumar P, Zhao ZG, Woodbury NW. Feature-level MALDI-MS characterization of in situ-synthesized peptide microarrays. Langmuir 2010 (2010).

  2. J Fu, K Cai, SA Johnston, NW Woodbury. Exploring peptide space for enzyme modulators.. J Am Chem Soc (2010).

  3. MP Greving, P Kumar, ZG Zhao, NW Woodbury. Feature-level MALDI-MS characterization of in situ-synthesized peptide microarrays.. Langmuir (2010).

  4. MP Greving, PE Belcher, CD Cox, D Daniel, CW Diehnelt and NW Woodbury. High-throughput screening in two dimensions: binding intensity and off-rate on a peptide microarray.. Biochemistry (2010).

  5. MP Greving, PE Belcher, CW Diehnelt, MJ Gonzalez-Moa, J Emery, J Fu, SA Johnston, NW Woodbury. Thermodynamic additivity of sequence variations: an algorithm for creating high affinity peptides without large libraries or structural information.. PLoS One (2010).


2009

  1. Allen JP, Cordova JM, Jolley CC, Murray TA, Schneider JW, Woodbury NW, Williams JC, Niklas J, Klihm G, Reus M, Lubitz W. EPR, ENDOR, and special TRIPLE measurements of P(*+) in wild type and modified reaction centers from Rb. sphaeroides. Photosynth Res (2009).

  2. L Kelbauskas, J Yodh, NW Woodbury, D Lohr. Intrinsic promoter nucleosome stability/dynamics variations support a novel targeting mechanism.. Biochemistry (2009).

  3. Lin S, Jaschke PR, Wang H, Paddock M, Tufts A, Allen JP, Rosell FI, Mauk AG, Woodbury NW, Beatty JT. Electron transfer in the Rhodobacter sphaeroides reaction center assembled with zinc bacteriochlorophyll. Proc Natl Acad Sci U S A (2009).

  4. Williams BA, Diehnelt CW, Belcher P, Greving M, Woodbury NW, Johnston SA, Chaput JC. Creating protein affinity reagents by combining peptide ligands on synthetic DNA scaffolds. J Am Chem Soc. (2009).


2008

  1. Chaput JC, Woodbury NW, Stearns LA, Williams BA.. Creating protein biocatalysts as tools for future industrial applications. Expert Opin Biol Ther (2008).

  2. L Kelbauskas, J Sun, NW Woodbury, D Lohr. Nucleosomal stability and dynamics vary significantly when viewed by internal versus terminal labels.. Biochemistry (2008).

  3. T Northen, MP Greving, N Woodbury. Combinatorial screening of biomimetic protein affinity materials.. Advance Materials (2008).


2007

  1. Gibasiewicz K, Ramesh VM, Lin S, Redding K, Woodbury NW, Webber AN.. Two equilibration pools of chlorophylls in the Photosystem I core antenna of Chlamydomonas reinhardtii.. Photosynth Res. (2007).

  2. Katilius E, Flores C, Woodbury NW. Exploring the Sequence Space of a DNA Aptamer Using Microarrays. Nucleic Acids Research (2007).

  3. Katilius E, Flores C, Woodbury NW.. Exploring the sequence space of a DNA aptamer using microarrays.. Nucleic Acids Res. (2007).

  4. L Kelbauskas, N Chan, R Bash, J Yodh, N Woodbury, and D.Lohr. Sequence-dependent nucleosome structure and stability variations detected by Fo¨rster Resonance Energy Transfer. Biochemistry (2007).

  5. L Kelbauskas, N Chan, R Bash, P DeBartolo, J Sun, N Woodbury, and D Lohr. Sequence-dependent variations associated with H2A/H2B depletion of nucleosomes.. Biophys J (2007).

  6. Wang H, Lin S, Allen JP, Williams JC, Blankert S, Laser C, Woodbury NW.. Protein dynamics control the kinetics of initial electron transfer in photosynthesis.. Science. (2007).


2006

  1. E katilius, Neal Woodbury. Multi-photon Excitation of Flourescent DNA Base Analogs. J.Biomed.Opt (2006).

  2. E Katilius, Neal Woodbury. Multi-photon exitation of fluorescent DNA base analogs. J.Biomed.Opt (2006).

  3. E katilius, Z Katiliene, Neal Woodbury. Signaling Aptamers Created Using Fluorescent Nucleotide Analogs. Analytical Chemistry (2006).

  4. E Katilius, Z Katiliene, Neal Woodbury. Singlaling aptamers created using fluorescent nucleotide analogs. Analytical Chemistry (2006).

  5. H Wang, S Lin, Neal Woodbury. Electronic Transitions od the Soret Band of Reaction Centers from Rhodobacter Sphaeroides Studied by Femtosecond Transient Absorbance Spectroscopy. J.Phys.Chem B (2006).

  6. H Wang, S Lin, Neal Woodbury. Electronic Transitions of the Soret Band of Reaction Centers from Rhodobacter sphaeroides Studied by Femtosecond Transient Absorbance Spectroscopy. J. Phys. Chem B (2006).

  7. S Lin, E Katilius, R IIagan, G Gibson, H Frank, Neal Woodbury. Mechanism of Cartenoid Singlet Excited State Energy Transfer in Modified Bacterial Reation Centers. J.Phys.Chem.B (2006).

  8. S Lin, E Katilius, R Ilagan, G Gibson, H Frank, Neal Woodbury. Mechanism of carotenoid singlet excited state energy transfer in modified bacterial reaction centers. J. Phys. Chem. B (2006).

  9. T Northen, D Brune, Neal Woodbury. Synthesis and Characterization of Peptide Grafted Porous Polymer Microstructures. Biomacromolecules (2006).


2005

  1. A Haffa, S Lin, R LoBrutto, J Williams, A Taguchi, J Allen, Neal Woodbury. Environmental Control of Primary Photochemistry in a Mutant Bacterial Reaction Center. Journal of Physical Chemistry B (2005).

  2. A Scruggs, C Flores, Rebekka Wachter, Neal Woodbury. Development and Characterization of Green Fluorescent Protein Mutants with Altered Lifetimes. Biochemistry (2005).