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  1. Adhikari S, Nice EC, Deutsch EW, Lane L, Omenn GS, Pennington SR, Paik YK, Overall CM, Corrales FJ, Cristea IM, Van Eyk JE, Uhlén M, Lindskog C, Chan DW, Bairoch A, Waddington JC, Justice JL, LaBaer J, Rodriguez H, He F, Kostrzewa M, Ping P, Gundry RL, Stewart P, Srivastava S, Srivastava S, Nogueira FCS, Domont GB, Vandenbrouck Y, Lam MPY, Wennersten S, Vizcaino JA, Wilkins M, Schwenk JM, Lundberg E, Bandeira N, Marko-Varga G, Weintraub ST, Pineau C, Kusebauch U, Moritz RL, Ahn SB, Palmblad M, Snyder MP, Aebersold R, Baker MS. (2020) “A high-stringency blueprint of the human proteome.” Nature Communications 11(1):5301.

  2. Florens L, Dong MQ, LaBaer J. (2020) “New and Improved Tools for the Omics Crew.” Journal of  Proteome Research. 19(7):2525-2528. 

  3. Saini H, Rahmani Eliato K, Veldhuizen J, Zare A, Allam M, Silva C, Kratz A, Truong D, Mouneimne G, LaBaer J, Ros R, Nikkhah M.(2020) “The role of tumor-stroma interactions on desmoplasia and tumorigenicity within a microengineered 3D platform.” Biomaterials.  247:119975.

  4. Rauf F, Anderson KS, LaBaer J. (2020) “Autoantibodies in early detection of breast cancer.” Cancer Epidemiology, Biomarkers and Prevention. 

  5. Song L, Song M, Rabkin CS, Williams S, Chung Y, Van Duine J, Liao LM, Karthikeyan K, Gao W, Park JG, Tang Y, Lissowska J, Qiu J, LaBaer J, Camargo MC. (2020). “Helicobacter pylori Immunoproteomic Profiles in Gastric Cancer.” Journal of Proteome Research. 

  6. Liao R, Pham T, Mastroeni D, Coleman PD, Labaer J, Guo J.(2020). “Highly Sensitive and Multiplexed In-Situ Protein Profiling with Cleavable Fluorescent Streptavidin.” Cells.

  7. Nagaratnam N, Tang Y, Botha S, Saul J, Li C, Hu H, Zaare S, Hunter M, Lowry D, Weierstall U, Zatsepin N, Spence JCH, Qiu J, LaBaer J, Fromme P, Martin-Garcia JM. (2020). “Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs.” Acta Crystallographica Section F Structural Biology Communications.

  8. Tang Y, Saul J, Nagaratnam N, Martin-Garcia JM, Fromme P, Qiu J, LaBaer J. (2020). “Construction of gateway-compatible baculovirus expression vectors for high-throughput protein expression and in vivo microcrystal screening.” Scientific Reports. 

  9. Hingorani P, Dinu V, Zhang X, Lei H, Shern JF, Park J, Steel J, Rauf F, Parham D, Gastier-Foster J, Hall D, Hawkins DS, Skapek SX, Labaer J, McEachron TA. (2020). “Transcriptome analysis of desmoplastic small round cell tumors identifies actionable therapeutic targets: a report from the Children's Oncology Group.” Scientific Reports.


  1. Henderson, M. C., M. Silver, Q. Tran, E. E. Letsios, R. Mulpuri, D. E. Reese, A. P. Lourenco, J. LaBaer, K. S. Anderson, J. Alpers, C. Costantini, N. Rohatgi, H. Ali, K. Baker, D. W. Northfelt, K. Ghosh, S. R. Grobmyer, W. Polen and J. K. Wolf (2019). "A Noninvasive Blood-based Combinatorial Proteomic Biomarker Assay to Detect Breast Cancer in Women over age 50 with BI-RADS 3, 4, or 5 Assessment." Clinical Cancer Research 25(1): 142-149.

  2. Encina, M. C., F. Picchi, V. Balboa, I. R. Perez, V. Calamia, J. Van Duine, J. Qiu, R. Manzano, M. Fuentes, N. Oreiro, J. LaBaer, C. R. Romero and F. Blanco (2019). "Autoantibodies As Potential Biomarkers For Pre-Symptomatic Knee Osteoarthritis. Data From The Osteoarthritis Initiative." Osteoarthritis and Cartilage 27: S290-S291.

  3. Truong, D. D., A. Kratz, J. G. Park, E. S. Barrientos, H. Saini, T. Nguyen, B. Pockaj, G. Mouneimne, J. LaBaer and M. Nikkhah (2019). "A Human Organotypic Microfluidic Tumor Model Permits Investigation of the Interplay between Patient-Derived Fibroblasts and Breast Cancer Cells." Cancer Research 79(12): 3139-3151.

  4. Pflughoeft, K. J., M. Mash, N. R. Hasenkampf, M. B. Jacobs, A. C. Tardo, D. M. Magee, L. Song, J. LaBaer, M. T. Philipp, M. E. Embers and D. P. AuCoin (2019). "Multi-platform Approach for Microbial Biomarker Identification Using Borrelia burgdorferi as a Model." Frontiers in Cellular and Infection Microbiology 9: 179.

  5. Camacho-Encina, M., V. Balboa-Barreiro, I. Rego-Perez, F. Picchi, J. VanDuin, J. Qiu, M. Fuentes, N. Oreiro, J. LaBaer, C. Ruiz-Romero and F. J. Blanco (2019). "Discovery of an autoantibody signature for the early diagnosis of knee osteoarthritis: data from the Osteoarthritis Initiative." Annals of the Rheumatic Diseases.

  6. Festa, F. and J. Labaer (2019). "Kinase Inhibitor Screening In Self-assembled Human Protein Microarrays." Jove-Journal of Visualized Experiments (152). 


  1. Yu, X. B., R. R. Noll, B. P. R. Duenas, S. C. Allgood, K. Barker, J. L. Caplan, M. P. Machner, J. LaBaer, J. Qiu and M. R. Neunuebel (2018). "Legionella Effector AnkX interacts with Host Nuclear Protein PLEKHN1." Bmc Microbiology 18.

  2. Yu, X. B., B. Petritis, H. Duan, D. K. Xu and J. LaBaer (2018). "Advances in Cell-Free Protein Array Methods." Expert Review of Proteomics 15(1): 1-11.

  3. Moremen, K. W., A. Ramiah, M. Stuart, J. Steel, L. Meng, F. Forouhar, H. A. Moniz, G. Gahlay, Z. W. Gao, D. Chapla, S. Wang, J. Y. Yang, P. K. Prabhakar, R. Johnson, M. dela Rosa, C. Geisler, A. V. Nairn, J. Seetharaman, S. C. Wu, L. Tong, H. J. Gilbert, J. LaBaer and D. L. Jarvis (2018). "Expression System for Structural and Functional Studies of Human Glycosylation Enzymes." Nature Chemical Biology 14(2): 156-+.

  4. Tekel, S. J., D. A. Vargas, L. Song, J. LaBaer, M. R. Caplan and K. A. Haynes (2018). "Tandem Histone-Binding Domains Enhance the Activity of a Synthetic Chromatin Effector." Acs Synthetic Biology 7(3): 842-852.

  5. Encina, M. C., V. Calamia, F. P. Figueira, J. Van Duine, J. Qiu, C. R. Romero, J. LaBaer and F. Blanco (2018). "Discovery of an Autoantibody Profile for the Early Diagnosis of Knee Osteoarthritis Using Nappa: Data from the Osteoarthritis Initiative." Osteoarthritis and Cartilage 26: S39-S40.

  6. Rauf, F., F. Festa, J. G. Park, M. Magee, S. Eaton, C. Rinaldi, C. M. Betanzos, L. Gonzalez-Malerva and J. LaBaer (2018). "Ibrutinib Inhibition of ERBB4 Reduces Cell Growth in a WNT5A-dependent Manner." Oncogene 37(17): 2237-2250.

  7. Song, L. S., M. Song, C. S. Rabkin, J. Van Duine, L. D. Liao, K. Karthikeyan, W. M. Gao, J. Lissowska, J. Qiu, J. LaBaer and M. C. Camargo (2018). "Helicobacter Pylori Immunoproteomic Profiles in Patients with Gastric Cancer." Gastroenterology 154(6): S926-S926.

  8. LaBaer, J., J. F. Miceli and L. P. Freedman (2018). "What's in a Sample? Increasing Transparency in Biospecimen Procurement Methods." Nature Methods 15(5): 303-304.

  9. Encina, M. C., V. Calamia, F. Picchi, J. VanDuin, J. Qiu, C. R. Romero, J. LaBaer and F. J. Blanco (2018). "Screening of an Autoantibody Signature of Early Knee Osteoarthritis: Data from the Osteoarthritis Initiative." Annals of the Rheumatic Diseases 77: 205-205.

  10. Venkatesh, A., C. Gil, M. Fuentes, J. LaBaer and S. Srivastava (2018). "A Perspective on Proteomics of Infectious Diseases." Proteomics Clinical Applications 12(4). PMID: 29282898.

  11. Pal, A., J. Park and J. LaBaer (2018). "Discovering the co-drivers of mutant TP53 that promote breast cancer progression." Cancer Research 78(13).

  12. Arevalo-Pinzon, G., M. Gonzalez-Gonzalez, C. F. Suarez, H. Curtidor, J. Carabias-Sanchez, A. Muro, J. LaBaer, M. A. Patarroyo and M. Fuentes (2018). "Self-assembling Functional Programmable Protein Array for Studying Protein-Protein Interactions in Malaria Parasites." Malaria Journal 17. PMID: 30016987.

  13. Camacho, M., F. Picchi, I. Rego-Perez, R. Manzano-Roman, V. Calamia, J. VanDuine, J. Qiu, C. Ruiz-Romero, M. Fuentes, J. LaBaer and F. J. Blanco (2018). "Detection of an Autoantibody Profile to Characterize Patients with Early (Pre-symptomatic) Knee Osteoarthritis: Data from the Osteoarthritis Initiative." Arthritis & Rheumatology 70.

  14. Paik, Y. K., L. Lane, T. Kawamura, Y. J. Chen, J. Y. Cho, J. LaBaer, J. S. Yoo, G. Domont, F. Corrales, G. S. Omenn, A. Archakov, S. Encarnacion-Guevara, S. Q. Lui, G. H. Salekdeh, J. Y. Cho, C. Y. Kim and C. M. Overall (2018). "Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function." Journal of Proteome Research 17(12): 4042-4050.


  1. Wang, D., L. H. Yang, P. Zhang, J. LaBaer, H. Hermjakob, D. Li and X. B. Yu (2017). "AAgAtlas 1.0: A Human Autoantigen Database." Nucleic Acids Research 45(D1): D769-D776. PMID: 27924021.

  2. Marko-Varga, G. and J. LaBaer (2017). "The Immune System and the Proteome." Journal of Proteome Research 16(1): 1-1. PMID: 28056507.

  3. Bian, X. F., C. Wasserfall, G. Wallstrom, J. Wang, H. Y. Wang, K. Barker, D. Schatz, M. Atkinson, J. Qiu and J. LaBaer (2017). "Tracking the Antibody Immunome in Type 1 Diabetes Using Protein Arrays." Journal of Proteome Research 16(1): 195-203. PMID: 27690455.

  4. Pal, A., J. Park, L. Gonzalez-Malerva, S. Eaton and J. LaBaer (2017). "Discovering Drug Targets for Aggressive Breast Cancer with TP53 missense mutations by a genome-wide screen." Cancer Research 77.

  5. Tang, Y., J. Qiu, M. Machner and J. LaBaer (2017). "Discovering Protein-Protein Interactions Using Nucleic Acid Programmable Protein Arrays." Current Protocols in Cell Biology 74: 15.21.11-15.21.14. PMID: 28256722.

  6. Song, L. S., G. Wallstrom, X. B. Yu, M. Hopper, J. Van Duine, J. Steel, J. Park, P. Wiktor, P. Kahn, A. Brunner, D. Wilson, E. R. Jenny-Avital, J. Qiu, J. Labaer, D. M. Magee and J. M. Achkar (2017). "Identification of Antibody Targets for Tuberculosis Serology Using High-Density Nucleic Acid Programmable Protein Arrays." Molecular & Cellular Proteomics 16(4): S277-S289. PMID: 28223349.

  7. Park, J. G., S. Paul, N. Briones, J. Zeng, K. Gillis, G. Wallstrom, J. LaBaer and S. A. Amundson (2017). "Developing Human Radiation Biodosimetry Models: Testing Cross-Species Conversion Approaches Using an Ex Vivo Model System." Radiation Research 187(6): 708-721. PMID: 28328310.

  8. Wang, H., G. Demirkan, X. Bian, G. Wallstrom, K. Barker, K. Karthikeyan, Y. Tang, S. F. Pasha, J. A. Leighton, J. Qiu and J. LaBaer (2017). "Identification of Antibody Against SNRPB, Small Nuclear Ribonucleoprotein-Associated Proteins B and B', as an Autoantibody Marker in Crohn's Disease using an Immunoproteomics Approach." J Crohns Colitis 11(7): 848-856. PMID: 28204086.

  9. Katchman, B. A., D. Chowell, G. Wallstrom, A. F. Vitonis, J. LaBaer, D. W. Cramer and K. S. Anderson (2017). "Autoantibody Biomarkers for the Detection of Serous Ovarian Cancer." Gynecologic Oncology 146(1): 129-136. PMID: 28427776.

  10. Ferdosi, S. R., B. Katchman, J. Loo, H. Grewal, S. Eaton, S. S. Yang, J. Park, J. Labaer and K. S. Anderson (2017). "Synthetic Lethal Targeting of p53 Mutant Cells with Prenylation Inhibitors." Cancer Research 77.

  11. Rivera, R., J. Wang, X. B. Yu, G. Demirkan, M. Hopper, X. F. Bian, T. Tahsin, D. M. Magee, J. Qiu, J. LaBaer and G. Wallstrom (2017). "Automatic Identification and Quantification of Extra-Well Fluorescence in Microarray Images." Journal of Proteome Research 16(11): 3969-3977.

  12. Yu, X. B., L. S. Song, B. Petritis, X. F. Bian, H. Y. Wang, J. Viloria, J. Park, H. Bui, H. Li, J. Wang, L. Liu, L. H. Yang, H. Duan, D. N. McMurray, J. M. Achkar, M. Magee, J. Qiu and J. LaBaer (2017). "Multiplexed Nucleic Acid Programmable Protein Arrays." Theranostics 7(16): 4057-4070.


  1. Bian, X., G. Wallstrom, A. Davis, J. Wang, J. Park, A. Throop, J. Steel, X. B. Yu, C. Wasserfall, D. Schatz, M. Atkinson, J. Qiu and J. LaBaer (2016). "Immunoproteomic Profiling of Antiviral Antibodies in New-Onset Type 1 Diabetes Using Protein Arrays." Diabetes 65(1): 285-296. PMID: 26450993.

  2. Ferdosi, S. R., H. Grewal, L. Gonzalez-Malerva, S. Eaton, N. Briones, J. LaBaer and K. S. Anderson (2016). "Inhibition of Breast Cancer Tumor Cell Lines by Simvastatin is Dependent on Specific p53 Mutation." Cancer Research 76.

  3. Wang, J., J. D. Figueroa, G. Wallstrom, K. Barker, J. G. Park, G. Demirkan, J. Lissowska, K. Anderson, J. Qiu and J. LaBaer (2016). "Plasma Autoantibodies Associated with Basal-like Breast Cancers." Cancer Research 76.

  4. Wiemann, S., C. Pennacchio, Y. H. Hu, P. Hunter, M. Harbers, A. Amiet, G. Bethel, M. Busse, P. Carninci, M. Diekhans, I. Dunham, T. Hao, J. W. Harper, Y. Hayashizaki, O. Heil, S. Hennig, A. Hotz-Wagenblatt, W. Jang, A. Jocker, J. Kawai, C. Koenig, B. Korn, C. Lambert, A. LeBeau, S. Lu, J. Maurer, T. Moore, O. Ohara, J. Park, A. Rolfs, K. Salehi-Ashtiani, C. Seiler, B. Simmons, A. V. Smith, J. Steel, L. Wagner, T. Weaver, R. Wellenreuther, S. W. Yang, M. Vidal, D. S. Gerhard, J. LaBaer, G. Temple, D. E. Hill and O. R. Collaboration (2016). "The ORFeome Collaboration: A Genome-scale Human ORF-clone Resource." Nature Methods 13(3): 191-192. PMID: 26914201.

  5. Wang, J., S. Shivakumar, K. Barker, Y. Tang, G. Wallstrom, J. G. Park, J. C. J. Tsay, H. I. Pass, W. N. Rom, J. LaBaer and J. Qiu (2016). "Comparative Study of Autoantibody Responses between Lung Adenocarcinoma and Benign Pulmonary Nodules." Journal of Thoracic Oncology 11(3): 334-345. PMID: 26890632.

  6. Christensen, M., J. Elmer, S. Barua, S. Eaton, L. Gonzalez-Malerva, J. Lehrman, J. LaBaer, K. Haynes and K. Rege (2016). "Overcoming Cellular Barriers for Enhancing Polymer-mediated Transgene Expression." Abstracts of Papers of the American Chemical Society 251.

  7. Yu, X. B., B. Petritis and J. LaBaer (2016). "Advancing Translational Research with Next-Generation Protein Microarrays." Proteomics 16(8): 1238-1250. PMID: 26749402.

  8. Moremen, K., L. Meng, F. Forouhar, S. Wang, R. Kadirvelraj, H. Moniz, A. Ramiah, Z. Gao, J. Seetharaman, S. Milaninia, G. Galay, M. Stuart, J. Steel, J. Labaer, Z. Wood, L. Tong and D. Jarvis (2016). "Insights On Mammalian Glycosylation Enzymes From High-Throughput Expression Studies." Faseb Journal 30.

  9. Hingorani, P., T. McEachron, J. Park, J. Steel, J. M. Gastier-Foster, C. Rodriguez-Galindo, S. Skapek, D. S. Hawkins, J. LaBaer and V. Dinu (2016). "RNA Profiling of Desmoplastic Small Round Cell Tumors (DSRCTs) Using Next-generation Sequencing." Journal of Clinical Oncology 34(15).

  10. Roesler, A. S., K. Sri, J. Qiu, J. LaBaer and K. S. Anderson (2016). "The APC capture: Rapid Identification of Target CD8+T Cell Epitopes by Flow Cytometry." Journal of Immunology 196.

  11. Yazaki, J., M. Galli, A. Y. Kim, K. Nito, F. Aleman, K. N. Chang, A. R. Carvunis, R. Quan, H. Nguyen, L. Song, J. M. Alvarez, S. S. C. Huang, H. M. Chen, N. Ramachandran, S. Altmann, R. A. Gutierrez, D. E. Hill, J. I. Schroeder, J. Chory, J. LaBaer, M. Vidal, P. Braun and J. R. Ecker (2016). "Mapping Transcription Factor Interactome Networks Using HaloTag Protein Arrays." Proceedings of the National Academy of Sciences of the United States of America 113(29): E4238-E4247. PMID: 27357687.

  12. Katchman, B. A., R. Barderas, R. Alam, D. Chowell, M. S. Field, L. J. Esserman, G. Wallstrom, J. LaBaer, D. W. Cramer, M. A. Hollingsworth and K. S. Anderson (2016). "Proteomic Mapping of p53 Immunogenicity in Pancreatic, Ovarian, and Breast Cancers." Proteomics Clinical Applications 10(7): 720-731. PMID: 27121307.

  13. Karthikeyan, K., K. Barker, Y. Y. Tang, P. Kahn, P. Wiktor, A. Brunner, V. Knabben, B. Takulapalli, J. Buckner, G. Nepom, J. LaBaer and J. Qiu (2016). "A Contra Capture Protein Array Platform for Studying Post-translationally Modified (PTM) Auto-antigenomes." Molecular & Cellular Proteomics 15(7): 2324-2337. PMID: 27141097.

  14. LoCascio, C., R. Kupp, S. Singh, E. Szeto, V. Loo, F. Rauf, A. Derogatis, J. Labaer, N. Sanai and S. Mehta (2016). "Role of Olig2 Partner Proteins in Glioblastoma." Neuro-Oncology 18: 43-43.

  15. Duenas, B. P. R., S. C. Allgood, R. R. Noll, X. Yu, J. Qiu, M. Machner, J. LaBaer and R. Neunuebel (2016). "Novel Human Targets of L Pneumophila Effector Protein AnkX Identified by NAPPA Protein Arrays." Molecular Biology of the Cell 27.


  1. Anderson, K. S., D. W. Cramer, S. Sibani, G. Wallstrom, J. Wong, J. Park, J. Qiu, A. Vitonis and J. LaBaer (2015). "Autoantibody Signature for the Serologic Detection of Ovarian Cancer." Journal of Proteome Research 14(1): 578-586. PMID: 25365139.

  2. Halden, R. U., E. M. Hartmann, N. D. Denslow, P. A. Haynes and J. LaBaer (2015). "Recent Advances in Proteomics Applied to Elucidate the Role of Environmental Impacts on Human Health and Organismal Function." Journal of Proteome Research 14(1): 1-4. PMID: 25751307

  3. Nilsson, C. L., E. Mostovenko, C. F. Lichti, K. Ruggles, D. Fenyo, K. R. Rosenbloom, W. S. Hancock, Y. K. Paik, G. S. Omenn, J. LaBaer, R. A. Kroes, M. Uhlen, S. Hober, A. Vegvari, P. E. Andren, E. P. Sulman, F. F. Lang, M. Fuentes, E. Carlsohn, M. R. Emmett, J. R. Moskal, F. S. Berven, T. E. Fehniger and G. Marko-Varga (2015). "Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome." Journal of Proteome Research 14(2): 603-608.  PMID: 25369122.

  4. Wiktor, P., A. Brunner, P. Kahn, J. Qiu, M. Magee, X. F. Bian, K. Karthikeyan and J. LaBaer (2015). "Microreactor Array Device." Scientific Reports 5. PMID 25736721.

  5. Yu, X. B., K. B. Decker, K. Barker, M. R. Neunuebel, J. Saul, M. Graves, N. Westcott, H. W. Hang, J. LaBaer, J. Qiu and M. P. Machner (2015). "Host-Pathogen Interaction Profiling Using Self-Assembling Human Protein Arrays." Journal of Proteome Research 14(4): 1920-1936. PMID: 25739981.

  6. Park, J., A. L. Throop and J. LaBaer (2015). "Site-specific Recombinational Cloning Using Gateway and In-fusion Cloning Schemes." Current Protocol in Molecular Biology 110: 3.20.21-23. PMID: 25827088.

  7. Diez, P., M. Gonzalez-Gonzalez, L. Lourido, R. M. Degano, N. Ibarrola, J. Casado-Vela, J. LaBaer and M. Fuentes (2015). "NAPPA as a Real New Method for Protein Microarray Generation." Microarrays (Basel) 4(2): 214-227. PMID: 27600221.

  8. Christensen, M. D., J. J. Elmer, S. Eaton, L. Gonzalez-Malerva, J. LaBaer and K. Rege (2015). "Kinome-level Screening Identifies Inhibition of Polo-like Kinase-1 (PLK1) as a Target for Enhancing Non-viral Transgene Expression." Journal of Controlled Release 204: 20-29. PMID: 25681050.

  9. Yu, X. B. and J. LaBaer (2015). "High-Throughput Identification of Proteins with AMPylation Using Self-Assembled Human Protein (NAPPA) Microarrays." Nature Protocols 10(5): 756-767. PMID: 25881200.

  10. Pal, A., L. Gonzalez-Malerva, S. Eaton, M. Guzman, D. Chow, H. W. Yin, J. Park, K. Anderson and J. LaBaer (2015). "Functional Genomics of TP53 Mutations and its Impact in Breast Cancer Progression." Cancer Research 75.

  11. Anderson, K. S., M. Pepe, J. Marks, P. Engstrom, C. Patriotis, R. Zangar, S. Skates, P. Lampe, J. LaBaer and C. I. Li (2015). "A Blinded Multicenter Phase II Study of a Panel of Plasma Biomarkers for the Detection of Triple Negative Breast Cancer." Cancer Research 75.

  12. Bian, X. F., P. Wiktor, P. Kahn, A. Brunner, A. Khela, K. Karthikeyan, K. Barker, X. Yu, M. Magee, C. H. Wasserfall, D. Gibson, M. E. Rooney, J. Qiu and J. LaBaer (2015). "Antiviral Antibody Profiling by High-Density Protein Arrays." Proteomics 15(12): 2136-2145. PMID: 25758251.

  13. Katchman, B. A., R. Alam, M. S. Field, J. Viloria, G. Wallstrom, J. LaBaer, P. Engstrom and K. S. Anderson (2015). "A Protein Microarray Signature of Autoantibody Biomarkers for the Detection of HER2+Breast Cancers." Cancer Research 75.

  14. Gong, Z., J. M. Martin-Garcia, S. M. Daskalova, F. M. Craciunescu, L. S. Song, K. Dorner, D. T. Hansen, J. H. Yang, J. LaBaer, B. G. Hogue, T. S. Mor and P. Fromme (2015). "Biophysical Characterization of a Vaccine Candidate Against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion." Plos One 10(8). PMID: 26295457.

  15. Wang, J., J. D. Figueroa, G. Wallstrom, K. Barker, J. G. Park, G. Demirkan, J. Lissowska, K. S. Anderson, J. Qiu and J. LaBaer (2015). "Plasma Autoantibodies Associated with Basal-like Breast Cancers." Cancer Epidemiology Biomarkers & Prevention 24(9): 1332-1340. PMID: 26070530.

  16. Olia, A. S., K. Barker, C. E. McCullough, H. Y. Tang, D. W. Speicher, J. Qiu, J. LaBaer and R. Marmorstein (2015). "Nonenzymatic Protein Acetylation Detected by NAPPA Protein Arrays." Acs Chemical Biology 10(9): 2034-2047. PMID: 26083674.

  17. Horvatovich, P., A. Vegvari, J. Saul, J. G. Park, J. Qiu, M. Syring, P. Pirrotte, K. Petritis, T. J. Tegeler, M. Aziz, M. Fuentes, P. Diez, M. Gonzalez-Gonzalez, N. Ibarrola, C. Droste, J. De Las Rivas, C. Gil, F. Clemente, M. L. Hernaez, F. J. Corrales, C. L. Nilsson, F. S. Berven, R. Bischoff, T. E. Fehniger, J. LaBaer and G. Marko-Varga (2015). "In Vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins." Journal of Proteome Research 14(9): 3441-3451. PMID: 26155874.

  18. Diez, P., C. Droste, R. M. Degano, M. Gonzalez-Munoz, N. Ibarrola, M. Perez-Andres, A. Garin-Muga, V. Segura, G. Marko-Varga, J. LaBaer, A. Orfao, F. J. Corrales, J. De Las Rivas and M. Fuentes (2015). "Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project." Journal of Proteome Research 14(9): 3530-3540. PMID: 26216070.

  19. Meng, L., S. Wang, R. Kadirvelraj, F. Forouhar, A. Ramiah, Z. Gao, J. Seetharaman, S. Milaninia, G. Gahlay, M. Stuart, J. Steel, J. LaBaer, D. Jarvis, L. Tong, Z. Wood and K. W. Moremen (2015). "Insights into Mammalian Glycosylation Enzymes Coming From Large-Scale Eukaryotic Expression Platforms." Glycobiology 25(11): 1269-1270.

  20. Seiler, C. Y., J. Eschbacher, R. Bowser and J. LaBaer (2015). "Sustainability in a Hospital-Based Biobank and University-Based DNA Biorepository: Strategic Roadmaps." Biopreservation and Biobanking 13(6): 401-409. PMID: 26697909.

  21. Kupp, R., C. Lo Cascio, F. Rauf, D. Meijer, C. D. Stiles, N. Sanai, J. LaBaer and S. V. Mehta (2015). "Targeting Olig2 Co-regulators for Malignant Glioma Therapy." Cancer Research 75.


  1. Seiler, C. Y., J. G. Park, A. Sharma, P. Hunter, P. Surapaneni, C. Sedillo, J. Field, R. Algar, A. Price, J. Steel, A. Throop, M. Fiacco and J. LaBaer (2014). "DNASU plasmid and PSI: Biology-Materials repositories: resources to accelerate biological research." Nucleic Acids Research 42(D1): D1253-D1260. PMID: 24225319.

  2. Skibinski, A., J. L. Breindel, A. Prat, P. Galvan, E. Smith, A. Rolfs, P. B. Gupta, J. LaBaer and C. Kuperwasser (2014). "The Hippo Transducer TAZ Interacts with the SWI/SNF Complex to Regulate Breast Epithelial Lineage Commitment." Cell Reports 6(6): 1059-1072. PMID: 24613358.

  3. Bhuiyan, M. S., M. Abu Sayeed, F. Khanam, D. T. Leung, T. R. Bhuiyan, A. Sheikh, U. Salma, R. C. LaRocque, J. B. Harris, M. Pacek, S. B. Calderwood, J. LaBaer, E. T. Ryan, F. Qadri and R. C. Charles (2014). "Cellular and Cytokine Responses to Salmonella enterica Serotype Typhi Proteins in Patients with Typhoid Fever in Bangladesh." American Journal of Tropical Medicine and Hygiene 90(6): 1024-1030. PMID: 24615129.

  4. Bian, X. F., G. Wallstrom, A. Throop, J. Park, J. Steel, C. Wasserfall, M. A. Atkinson, D. A. Schatz, J. Qiu and J. Labaer (2014). "Novel Systematic Virus Antibody Survey in New-Onset Type 1 Diabetes by Protein Arrays." Diabetes 63: A324-A324.

  5. Saul, J., B. Petritis, S. Sau, F. Rauf, M. Gaskin, B. Ober-Reynolds, I. Mineyev, M. Magee, J. Chaput, J. Qiu and J. LaBaer (2014). "Development of a full-length human protein production pipeline." Protein Science 23(8): 1123-1135. PMID: 24806540.

  6. Gibson, D. S., J. Qiu, S. Finnegan, E. A. Mendoza, K. Barker, C. Mc Allister, J. Labaer And M. Rooney (2014). "Autoantibodies Predictive Of Uveitis In Juvenile Idiopathic Arthritis (Aperture): A Proof Of Concept Study." Rheumatology 53: 2-2.

  7. Prados-Rosales, R., L. J. Carreno, A. Batista-Gonzalez, A. Baena, M. M. Venkataswamy, J. Xu, X. Yu, G. Wallstrom, D. M. Magee, J. LaBaer, J. M. Achkar, W. R. Jacobs, Jr., J. Chan, S. A. Porcelli and A. Casadevall (2014). "Mycobacterial membrane vesicles administered systemically in mice induce a protective immune response to surface compartments of Mycobacterium tuberculosis." MBio 5(5): e01921-01914. PMID: 25271291.

  8. Wang, W., L. L. Yin, L. Gonzalez-Malerva, S. P. Wang, X. B. Yu, S. Eaton, S. T. Zhang, H. Y. Chen, J. LaBaer and N. J. Tao (2014). "In situ drug-receptor binding kinetics in single cells: a quantitative label-free study of anti-tumor drug resistance." Scientific Reports 4. PMID: 25312029.

  9. Wang, J., J. D. Figueroa, G. Wallstrom, J. Sampson, E. M. Garcia, J. Steel, J. Park, K. S. Anderson, L. Brinton, M. Garcia-Closas, J. Lissowska, M. E. Sherman, J. Qiu and J. LaBaer (2014). "Autoantibody biomarker discovery in basal-like breast cancer using nucleic acid programmable protein array." Cancer Research 74(19).

  10. Liang, W. B., S. P. Wang, F. Festa, P. Wiktor, W. Wang, M. Magee, J. LaBaer and N. J. Tao (2014). "Measurement of Small Molecule Binding Kinetics on a Protein Microarray by Plasmonic-Based Electrochemical Impedance Imaging." Analytical Chemistry 86(19): 9860-9865.

  11. Katchman, B. A., R. Alam, G. Wallstrom, J. LaBaer, M. A. Hollingsworth, D. W. Cramer and K. S. Anderson (2014). "Identification of autoantibody biomarkers to wild-type and mutant p53 in pancreatic and ovarian cancer." Cancer Research 74(19).

  12. Demirkan, G., L. Soderberg, G. Wallstrom, E. Szeto, K. Barker, J. Wang, J. LaBaer, N. M. Lindor and J. Qiu (2014). "Proteome scale identification of autoantibody biomarkers in colorectal cancer." Cancer Research 74(19).

  13. Gong, Z., S. A. Kessans, L. S. Song, K. Dorner, H. H. Lee, L. R. Meador, J. LaBaer, B. G. Hogue, T. S. Mor and P. Fromme (2014). "Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41." Protein Science 23(11): 1607-1618. PMID: 25155369.

  14. Thongboonkerd, V., J. LaBaer and G. B. Domont (2014). "Recent Advances of Proteomics Applied to Human Diseases." Journal of Proteome Research 13(11): 4493-4496. PMID: 25377741.

  15. Woolery, A. R., X. B. Yu, J. LaBaer and K. Orth (2014). "AMPylation of Rho GTPases Subverts Multiple Host Signaling Processes." Journal of Biological Chemistry 289(47). PMID: 25301945.

  16. Yu, X., A. R. Woolery, P. Luong, Y. H. Hao, M. Grammel, N. Westcott, J. Park, J. Wang, X. Bian, G. Demirkan, H. C. Hang, K. Orth and J. LaBaer (2014). "Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays." Molecular & Cellular Proteomics 13(11): 3164-3176. PMID: 25073739.

  17. Yu, X. B., X. F. Bian, A. Throop, L. S. Song, L. Del Moral, J. Park, C. Seiler, M. Fiacco, J. Steel, P. Hunter, J. Saul, J. Wang, J. Qiu, J. M. Pipas and J. LaBaer (2014). "Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions." Theranostics 4(8): 808-822. PMID24955142.

  18. Woolery, A. R., X. Yu, J. LaBaer and K. Orth (2014). "AMPylation of Rho GTPases disrupts multiple host signaling processes." Molecular Biology of the Cell 25. PMID: 25301945

  19. Yu, X. B., P. Talukder, C. Bhattacharya, N. E. Fahmi, J. A. Lines, L. M. Dedkova, J. LaBaer, S. M. Hecht and S. X. Chen (2014). "Probing of CD4 binding pocket of HIV-1 gp120 glycoprotein using unnatural phenylalanine analogues." Bioorganic & Medicinal Chemistry Letters 24(24): 5699-5703. PMID: 25453804.


  1. Lee, J. R., D. M. Magee, R. S. Gaster, J. LaBaer and S. X. Wang (2013). "Emerging Protein Array Technologies for Proteomics." Expert Review of Proteomics 10(1): 65-75. PMID: 23414360.

  2. Cormier, C., J. Park, M. Fiacco, J. Steel, P. Hunter and J. LaBaer (2013). "A Biologist's Resource for Protein Expression Plasmids: The Protein Structure Initiative: Biology-Materials Repository." Faseb Journal 27.

  3. Festa, F., J. Steel, X. F. Bian and J. Labaer (2013). "High-throughput Cloning and Expression Library Creation for Functional Proteomics." Proteomics 13(9): 1381-1399. PMID: 23457047.

  4. Wallstrom, G., K. S. Anderson and J. LaBaer (2013). "Biomarker Discovery for Heterogeneous Diseases." Cancer Epidemiology Biomarkers & Prevention 22(5): 747-755. PMID: 23462916.

  5. Yu, X. B., G. Wallstrom, D. M. Magee, J. Qiu, D. E. A. Mendoza, J. Wang, X. F. Bian, M. Graves and J. LaBaer (2013). "Qantifying Antibody Binding on Protein Microarrays Using Microarray Nonlinear Calibration." Biotechniques 54(5): 257-+. PMID: 23662896.

  6. Wang, J., K. Barker, J. Steel, J. Park, J. Saul, F. Festa, G. Wallstrom, X. B. Yu, X. F. Bian, K. S. Anderson, J. D. Figueroa, J. LaBaer and J. Qiu (2013). "A Versatile Protein Microarray Platform Enabling Antibody Profiling Against Denatured Proteins." Proteomics Clinical Applications 7(5-6): 378-383.

  7. Festa, F., S. M. Rollins, K. Vattem, M. Hathaway, P. Lorenz, E. A. Mendoza, X. B. Yu, J. Qiu, G. Kilmer, P. Jensen, B. Webb, E. T. Ryan and J. LaBaer (2013). "Robust Microarray Production of Freshly Expressed Proteins in a Human Milieu." Proteomics Clinical Applications 7(5-6): 372-377. PMID: 23027544.

  8. Kang, D. W., J. G. Park, Z. E. Ilhan, G. Wallstrom, J. LaBaer, J. B. Adams and R. Krajmalnik-Brown (2013). "Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children." Plos One 8(7). PMID: 23844187.

  9. Gahlay, G., M. Stuart, C. Geisler, K. W. Moremen, J. Steel, J. LaBaer and D. L. Jarvis (2013). "Repository of Recombinant Expression Constructs for Mammalian Glycosylation Enzymes: Baculovirus Vectors for Glycosyltransferase and Glycoside Hydrolase Production in Insect Cells." Glycobiology 23(11): 1351-1352.

  10. Gonzalez-Malerva, L. G., S. Eaton, A. Pal, D. Chow, M. Guzman, E. Amouzougan, H. W. Yin, J. Park, K. Anderson and J. LaBaer (2013). "Functional Differences of Mutant p53's Expressed in MCF10A Cells and Their Contribution to Breast Carcinogenesis." Molecular Cancer Therapeutics 12(11).

  11. Moremen, K. W., H. Moniz, A. Ramiah, L. Meng, Z. Gao, A. V. Nairn, Y. Xiang, M. dela Rosa, D. Jarvis, J. Steel and J. LaBaer (2013). "Repository of Recombinant Expression Constructs for Mammalian Glycosylation Enzymes: Production of Glycosyltransferases and Glycoside Hydrolases in Mammalian Cells." Glycobiology 23(11): 1351-1351.

  12. Miersch, S., X. F. Bian, G. Wallstrom, S. Sibani, T. Logvinenko, C. H. Wasserfall, D. Schatz, M. Atkinson, J. Qiu and J. LaBaer (2013). "Serological Autoantibody Profiling of Type 1 Diabetes by Protein Arrays." Journal of Proteomics 94: 486-496. PMID: 24148850.

  13. Skates, S. J., M. A. Gillette, J. LaBaer, S. A. Carr, L. Anderson, D. C. Liebler, D. Ransohoff, N. Rifai, M. Kondratovich, Z. Tezak, E. Mansfield, A. L. Oberg, I. Wright, G. Barnes, M. Gail, M. Mesri, C. R. Kinsinger, H. Rodriguez and E. S. Boja (2013). "Statistical Design for Biospecimen Cohort Size in Proteomics-based Biomarker Discovery and Verification Studies." Journal of Proteome Research 12(12): 5383-5394. PMID: 24063748.

  14. Spera, R., F. Festa, N. L. Bragazzi, E. Pechkova, J. LaBaer and C. Nicolini (2013). "Conductometric Monitoring of Protein-Protein Interactions." Journal of Proteome Research 12(12): 5535-5547. PMID: 24106799.

  15. Seiler, C. Y., J. Park, A. Sharma, J. Steel, P. Hunter, A. Throop, C. Sedillo, M. Fiacco and J. LaBaer (2013). "DNASU Plasmid and PSI:Biology-Materials Repositories: A Resource for Protein Expression Plasmids." Molecular Biology of the Cell 24.


  1. Qiu, J. and Anderson, KS, Proteomic and Metabolomic Approaches to Biomarker Discovery, Autoantibodies and Biomarker Discovery, Editors Haleem Issaq and Tim Veenstra,  Academic Press: 2012 

  2. Wang J, Barker K, Steel J, Park J, Saul J, Festa F, Wallstrom G, Yu X, Bian X, Anderson KS, Figueroa J, Labaer J, Qiu J. A versatile protein microarray platform enabling antibody profiling against denatured proteinsProteomics Clin Appl. 2012 Oct 2. doi: 10.1002/prca.201200062. [Epub ahead of print] Abstract

  3. Festa F, Rollins SM, Vatten K, Hathaway M, Lorenz P, Mendoza EA, Yu X, Qui J, Kilmer G, Jensen P, Webb B, Ryan ET, LaBaer J - Robust microarray production of freshly expressed proteins in a human milieu. Proteomics Clin Appl. 2012 Oct 2. doi: 10.1002/prca.201200063. [Epub ahead of print] PMID: 23027544 Abstract

  4. Hood LE, Omenn GS, Moritz RL, Aebersold R, Yamamoto KR, Amos M, Hunter-Cevera J, Locascio L; Workshop Participants.   New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences. Proteomics. 2012 Sep;12(18):2773-83. doi: 10.1002/pmic.201270086. Abstract

  5. LaBaer, J. Improving international research with clinical specimens: 5 achievable objectives (Perspective).  Accepted September 21, 2012: Journal of Proteome Research: 2012 Sep 21. [Epub ahead of print], PMID: 22998582 Abstract

  6. Takulapalli BR, Qiu J, Magee DM, Kahn P, Brunner A, Barker K, Means S, Miersch S, Bian X, Mendoza A, Festa F, Syal K, Park JG, LaBaer J, and Wiktor P. High Density Diffusion-Free Nanowell Arrays. Journal of Proteome Research,  2012 Aug 3;11(8):4382-91. Epub 2012 Jul 13.  PMID: 22742968 Abstract

  7. Gibson DS, Qiu J, Mendoza EA, Barker K, Rooney ME, LaBaer J. Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays. Arthritis Res Ther. Apr 17;14(2):R77. [Epub ahead of print] Abstract

  8. Wright C, Sibani S, Trudgian D, Fischer R, Kessler B, LaBaer J, Bowness P. Detection of multiple autoantibodies in patients with ankylosing spondylitis using nucleic Acid programmable protein arrays. Mol Cell Proteomics. 11 (2), M9.00384. Abstract

  9. Gibson DS, Rooney ME, Finnegan SF, Qiu J, Thompson DC, LaBaer J, Pennington SR, Duncan MW. (2012) Biomarkers in rheumatology, now and in the future. Rheumatology;Mar;51(3):423-33. Epub 2011 Dec 16. Abstract


  1. Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, Engstrom P, Labaer J. (2011) Protein Microarray Signature of Autoantibody Biomarkers for the Early Detection of Breast Cancer. J Proteome Res Jan 7;10(1):85-96. Epub 2010 Nov 23. Abstract

  2. Anderson KS, Wong J, D'Souza G, Riemer AB, Lorch J, Haddad R, Pai SI, Longtine J, McClean M, LaBaer J, Kelsey KT, Posner M. (2011) Serum antibodies to the HPV16 proteome as biomarkers for head and neck cancer. Br J Cancer Jun 7;104(12):1896-905. Abstract

  3. Cormier CY, Park JG, Fiacco M, Steel J, Hunter P, Kramer J, Singla R, Labaer J. (2011) PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. J Struct Funct Genomics. Mar 1 [Epub ahead of print]. July 1: 12 (2):55-62. Abstract

  4. Gonzalez-Malerva L, Park J, Zou L, Hu Y, Moradpour Z, Pearlberg J, Sawyer J, Stevens H, Harlow E, Labaer J. (2011) High-throughput ectopic expression screen for tamoxifen resistance identifies an atypical kinase that blocks autophagy. Proc Natl Acad Sci Jan 13. [Epub ahead of print]. Abstract

  5. Hancock W, Labaer J, Marko-Varga GA. (2011) Journal of Proteome Research - 10th Anniversary. J Proteome Res Jan 7;10(1):1-2. Abstract

  6. Link AJ, Labaer J. (2011) Off-line desalting of Peptide mixtures. Cold Spring Harb Protocols Mar 1;2011:prot5591. doi: 10.1101/pdb.prot5591. Abstract

  7. Link AJ, LaBaer J. (2011) Solution protein digest. Cold Spring Harb Protoc. Feb 1;2011:pdb.prot5569. doi: 10.1101/pdb.prot5569. Abstract

  8. Link AJ, LaBaer J. (2011) Trichloroacetic acid (TCA) precipitation of proteins. Cold Spring Harb Protocols Aug 1;2011(8):993-4. Abstract

  9. Link AJ, LaBaer J. (2011) Setup and demonstration of a nanoelectrospray ionization source and tandem mass spectrometry. Cold Spring Harb Protocols Jul 1;2011(7):888-91. Abstract

  10. Link, A. J. and LaBaer, J. (2011) Setup and demonstration of a nanoelectrospray ionization source and tandem mass spectrometry. Cold Spring Harb Protoc (7). Abstract

  11. Miersch S, and Labaer J. (2011) Nucleic Acid programmable protein arrays: versatile tools for array-based functional protein studies. Curr Protoc Protein Sci. Apr;Chapter 27:Unit27.2. Abstract

  12. Qiu J, Labaer J. (2011) Nucleic Acid programmable protein array a just-in-time multiplexed protein expression and purification platform. Methods Enzymolgy 500:151-63. Abstract

  13. Sheikh, A., Khanam, F., Sayeed, M. A., Rahman, T., Pacek, M., Hu, Y., Rollins, A., Bhuiyan, M. S., Rollins, S., Kalsy, A., Arifuzzaman, M., Leung, D. T., Sarracino, D. A., Krastins, B., Charles, R. C., Larocque, R. C., Cravioto, A., Calderwood, S. B., Brooks, W. A., Harris, J. B., LaBaer, J., Qadri, F., and Ryan, E. T. (2011) Interferon-gamma and Proliferation Responses to Salmonella enterica Serotype Typhi Proteins in Patients with S. Typhi Bacteremia in Dhaka, Bangladesh. PLoS Negl Trop Dis 5, (6), e1193. Abstract

  14. Sibani S, and Labaer J. (2011) Immunoprofiling Using NAPPA Protein Microarrays. Methods Mol Biol. 723:149-61. Abstract

  15. Spera R, Labaer J, Nicolini C. (2011) MALDI-TOF characterization of NAPPA-generated proteins. J Mass Spectrom Sep;46(9):960-5. Abstract


  1. Anderson KS, Wong J, Vitonis A, Crum CP, Sluss PM, Labaer J, Cramer D. (2010) P53 Autoantibodies As Potential Detection And Prognostic Biomarkers In Serous Ovarian Cancer. Cancer Epidemiology, Biomarkers, and Prevention Mar;19(3):859-68. PMID: 20200435

  2. Ceroni A, Sibani S, Baiker A, Pothineni VR, Bailer SM, LaBaer J, Haas J, Campbell CJ. (2010) Systematic analysis of the IgG antibody immune response against varicella zoster virus (VZV) using a self-assembled protein microarray. Mol Biosyst Sep;6(9):1604-10. Epub 2010 Jun 1. Abstract

  3. Cormier, CY; Mohr, SE; Zuo, D; Hu, Y; Rolfs, A; Kramer, J; Taycher, E; Kelley, F; Fiacco, M; Turnbull, G; LaBaer, J. (2010) Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. Nucleic Acids Research Jan;38(Database issue):D743-9. PMID: 19906724

  4. Ramireza, AB. Locha, CM, Zhanga, Y, Liu, Y, Wang, X, Wayner, EA, Sargent, JE, Sibani, S, Hainsworth, E, Mendoza, EA, Eugene, R, LaBaer, J, Urban, ND, McIntosh, MW, and Lampe, PD. (2010) Use of a single chain antibody library for ovarian cancer biomarker discovery. Molecular and Cellular Proteomics in press. PMID: 20200435


  1. Montor WR, Huang J, Hu Y, Hainsworth E, Lynch S, Kronish JW, Ordonez CL, Logvinenko T, Lory S, LaBaer J. (2009) Genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays. Infection and Immunity Nov;77(11):4877-86. Epub 2009 Sep 8. Abstract

  2. Murphy RF, Labaer J. (2009) Locations everyone: lights, camera, action!. Journal of Proteome Research Jan;8(1):1. Abstract

  3. Thanawastien A, Montor WR, Labaer J, Mekalanos JJ, Yoon SS. (2009) Vibrio cholerae proteome-wide screen for immunostimulatory proteins identifies phosphatidylserine decarboxylase as a novel Toll-like receptor 4 agonist. PLoS Pathogens Aug;5(8):e1000556. Epub 2009 Aug 21. Abstract

  4. Wong, J., Sibani, S., Lokko, N. N., LaBaer, J., and Anderson, K. S. (2009) Rapid detection of antibodies in sera using multiplexed self-assembling bead arrays. Journal of Immunological Methods 350, (1-2), 171-182. Abstract

  5. Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML. (2009) High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Res. (4): 556-66. Epub 2009 Jan 21. PMID: 19158363


  1. Anderson KS, Ramachandran N, Wong J, Raphael JV, Hainsworth E, Demirkan G, Cramer D, Aronzon D, Hodi FS, Harris L, Logvinenko T, LaBaer J. (2008) Application of protein microarrays for multiplexed detection of antibodies to tumor antigens in breast cancer. J Proteome Res. 7(4):1490-9. Epub 2008 Feb 27. PMID: 18311903

  2. Berman, H.M., Westbrook, J.D., Gabanyi, M.J., Tao, Y., Shah, R., Kouranov, A., Schwede, T., Arnold, K., Kiefer, F., Bordoli, L., Kopp, J., Podvinec, M., Adams, P.D., Carter, L.G., Minor, W., Nair, R., LaBaer, J (2008) The Protein Structure Initiative Structural Genomics Knowledgebase. Nucl. Acid Res. .PMID: 19010965

  3. Hughes SR, Dowd PF, Hector RE, Panavas T, Sterner DE, Qureshi N, Bischoff KM, Bang SS, Mertens JA, Johnson ET, Li XL, Jackson JS, Caughey RJ, Riedmuller SB, Bartolett S, Liu S, Rich JO, Farrelly PJ, Butt TR, Labaer J, Cotta MA. (2008) Lycotoxin-1 insecticidal peptide optimized by amino acid scanning mutagenesis and expressed as a coproduct in an ethanologenic Saccharomyces cerevisiae strain. J Pept Sci. Sep;14(9):1039-50. doi: 10.1002/psc.1040..PMID: 18465835

  4. Hughes SR, Sterner DE, Bischoff KM, Hector RE, Dowd PF, Qureshi N, Bang SS, Grynaviski N, Chakrabarty T, Johnson ET, Dien BS, Mertens JA, Caughey RJ, Liu S, Butt TR, LaBaer J, Cotta MA, Rich JO. (2008) Engineered Saccharomyces cerevisiae strain for improved xylose utilization with a three-plasmid SUMO yeast expression system. Plasmid. 61(1):22-38. Epub 2008 Oct 26. PMID: 18831987

  5. Murphy RF, Labaer J. (2008) Locations Everyone: Lights, Camera, Action. J Proteome Res. Jan;8(1):1. doi: 10.1021/pr8009947. PMID: 19055481

  6. Ramachandran N, Anderson KS, Raphael JV, Hainsworth E, Sibani S, Montor WR, Pacek M, Wong J, Elianne M, Sanda MG, Hu Y, Lovinenko T, Labaer J. (2008) Tracking humoral responses using self assembling protein microarrays. Proteomics Clin. Appl. (10/11): 1518-1527. PMID: 21136799

  7. Ramachandran N, Raphael JV, Hainsworth E, Demirkan G, Fuentes MG, Rolfs A, Hu Y, Labaer J. (2008) Next-generation high-density self-assembling functional protein arrays. NatMethods (5):535. PMID: 18469824

  8. Ramachandran N, Srivastava S, Labaer J. (2008) Applications of protein microarrays for biomarker discovery. Proteomics Clin. Appl. (10/11): 1444-1459. PMID: 21136793

  9. Rolfs A, Hu Y, Ebert L, Hoffmann D, Zuo D, Ramachandran N, Raphael J, Kelley F, McCarron S, Jepson DA, Shen B, Baqui MM, Pearlberg J, Taycher E, DeLoughery C, Hoerlein A, Korn B, LaBaer J. (2008) A biomedically enriched collection of 7000 human ORF clones. PLoS ONE. 3(1):e1528. PMID: 18231609

  10. Rolfs A, Montor WR, Yoon SS, Hu Y, Bhullar B, Kelley F, McCarron S, Jepson DA, Shen B, Taycher E, Mohr SE, Zuo D, Williamson J, Mekalanos J, Labaer J. (2008) Production and sequence validation of a complete full length ORF collection for the pathogenic bacterium Vibrio cholerae. Proc Natl Acad Sci U S A. 105(11):4364-9. Epub 2008 Mar 12. PMID: 18337508

  11. Slagowski NL, Kramer RW, Morrison MF, LaBaer J, Lesser CF. (2008) A functional genomic yeast screen to identify pathogenic bacterial proteins. PLoS Pathog. 4(1):e9. PMID: 18208325

  12. Srivastava S, LaBaer J. (2008) Nanotubes light up protein arrays. Nat Biotechnol. 26(11):1244-6. PMID: 18997763


  1. Hu Y, Rolfs A, Bhullar B, Murthy TV, Zhu C, Berger MF, Camargo AA, KelleyF, McCarron S, Jepson D, Richardson A, Raphael J, Moreira D, Taycher E, Zuo D, Mohr S, Kane MF, Williamson J, Simpson A, Bulyk ML, Harlow E, Marsischky G, Kolodner RD, LaBaer J. Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae. Genome Res. 2007 Apr;17(4):536-43. Epub 2007 Feb 23. PMID: 17322287

  2. Taycher E, Rolfs A, Hu Y, Zuo D,Mohr SE, Williamson J, LaBaer J. A novel approach to sequence validating protein expression clones with automated decision making. BMC Bioinformatics. 2007 Jun 13;8:198. PMID: 17567908

  3. Murthy T, Rolfs A, Hu Y, Shi Z, Raphael J, Moreira D, Kelley F, McCarron S, Jepson D, Taycher E, Zuo D, Mohr S E, Fernandez M, Brizuela L, LaBaer J. A full-genomic sequence-verified protein-coding gene collection for Francisella tularensis. PLoS ONE 2007;2:e577 PMID: 17593976

  4. Langlais C, Guilleaume B, Wermke N, Scheuermann T, Ebert L, LaBaer J, Korn B. A systematic approach for testing expression of human full-length proteins in cell-free expression systems. BMC Biotechnol. 2007 Oct 3;7:64. PMID: 17915018

  5. Xu L, Zhu J, Hu X, Zhu H, Kim HT, LaBaer J, Goldberg A, Yuan J. c-IAP1 cooperates with Myc by acting as a ubiquitin ligase for Mad1. Mol Cell. 2007 Dec 14;28(5):914-22. PMID: 18082613.


  1. Ramachandran N, Hainsworth E, Demirkan G, LaBaer J.On-chip protein synthesis for making microarrays. Methods Mol Biol. 2006;328:1-14. PMID: 16785638

  2. Braun P, LaBaer J. High Throughput Purification of Proteins from Escherichia Coli. Cell Biology: A Laboratory Handbook, 3rd Edition, Volume 4. Elsevier Academic Press: Burlington, MA (2006): 73- 77.

  3. Butcher RA, Bhullar BS, Perlstein EO, Marsischky G, LaBaer J, Schreiber SL. Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway. Nat Chem Biol. 2006 Feb;2(2):103-9. Epub 2006 Jan 15. PMID: 16415861

  4. Witt AE, Hines LM, Collins NL, Hu Y, Gunawardane RN, Moreira D, Raphael J, Jepson D, Koundinya M, Rolfs A, Taron B, Isakoff SJ, Brugge JS, LaBaer J. Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer. J Proteome Res. 2006 Mar;5(3):599-610. PMID: 16512675

  5. Park J, Labaer J. Recombinational cloning. Curr Protoc Mol Biol. 2006 May;Chapter 3:Unit 3.20. PMID: 18265386

  6. Cooper AA, Gitler AD, Cashikar A, Haynes CM, Hill KJ, Bhullar B, Liu K, Xu K, Strathearn KE, Liu F, Cao S, Caldwell KA, Caldwell GA, Marsischky G, Kolodner RD, Labaer J, Rochet JC, Bonini NM, Lindquist S. Alpha-synuclein blocks ER-Golgi traffic and Rab1 rescues neuron loss in Parkinson's models. Science. 2006 Jul 21;313(5785):324-8. Epub 2006 Jun 22.

  7. Haab BB, Paulovich AG, Anderson NL, Clark AM, Downing GJ, Hermjakob H, Labaer J, Uhlen M. A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report. Mol Cell Proteomics. 2006 Oct;5(10):1996-2007. Epub 2006 Jul 24. PMID: 16867976

  8. Chatterjee DK, LaBaer J. Protein Technologies. Current Opinion in Biotechnology, 17 (August 2006): 334-336.

  9. Zuo D, Mohr SE, Hu Y, Taycher E, Rolfs A, Kramer J, Williamson J, LaBaer J. PlasmID: a centralized repository for plasmid clone information and distribution. Nucleic Acids Res. 2007 Jan;35(Database issue):D680-4. Epub 2006 Nov 28. PMID: 17132831


  1. LaBaer J, Ramachandran N. Protein microarrays as tools for functional proteomics. Curr Opin Chem Biol. 2005 Feb;9(1):14-9. PMID: 15701447

  2. Fan M, Tsai J, Chen B, Fan K, LaBaer J. A central repository for published plasmids. Science. 2005 Mar 25;307(5717):1877. PMID: 15790830

  3. Chang CY, LaBaer J. DNA polymorphism detector: an automated tool that searches for allelic matches in public databases for discrepancies found in clone or cDNA sequences. Bioinformatics. 2005 May 1;21(9):2133-5. Epub 2005 Feb 2. PMID: 15695424

  4. Collins NL, Reginato MJ, Paulus JK, Sgroi DC, Labaer J, Brugge JS. G1/S cell cycle arrest provides anoikis resistance through Erk-mediated Bim suppression. Mol Cell Biol. 2005 Jun;25(12):5282-91. PMID: 15923641

  5. Park J, Hu Y, Murthy TV, Vannberg F, Shen B, Rolfs A, Hutti JE, Cantley LC, Labaer J, Harlow E, Brizuela L. Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation. Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8114-9. Epub 2005 May 31. PMID: 15928075

  6. LaBaer J. So, you want to look for biomarkers (introduction to the special biomarkers issue). J Proteome Res. 2005 Jul-Aug;4(4):1053-9. PMID: 16083254

  7. Anderson KS, LaBaer J. The sentinel within: exploiting the immune system for cancer biomarkers. J Proteome Res. 2005 Jul-Aug;4(4):1123-33. PMID: 16083262

  8. Ramachandran N, Larson DN, Stark PR, Hainsworth E, LaBaer J. Emerging tools for real-time label-free detection of interactions on functional protein microarrays. FEBS J. 2005 Nov;272(21):5412-25. PMID: 16262683

  9. Komaroff AL, Labaer J.Health for life. Genomic medicine: the science speeds up. Newsweek. 2005 Dec 12;146(24):57. PMID: 16375163


  1. LaBaer J. Mining the literature and large datasets. Nat Biotechnol. 2003 Sep;21(9):9767. PMID: 12949554

  2. Pearlberg J, LaBaer J. Protein expression clone repositories for functional proteomics. Curr Opin Chem Biol. 2004 Feb;8(1):98-102. PMID: 15036163

  3. Seton-Rogers SE, Lu Y, Hines LM, Koundinya M, LaBaer J, Muthuswamy SK, Brugge JS. Cooperation of the ErbB2 receptor and transforming growth factor beta in induction of migration and invasion in mammary epithelial cells. Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1257-62. Epub 2004 Jan 22. PMID: 14739340

  4. Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, Walter JC, LaBaer J.Self-assembling protein microarrays. Science. 2004 Jul 2;305(5680):86-90. PMID: 15232106

  5. Murthy TV, Wu W, Qiu QQ, Shi Z, LaBaer J, Brizuela L. Bacterial cell-free system for high-throughput protein expression and a comparative analysis of Escherichia coli cell-free and whole cell expression systems. Protein Expr Purif. 2004 Aug;36(2):217-25. PMID: 15249043

  6. Hu Y, Labaer J. Tracking gene-disease relationships for high-throughput functional studies. Surgery. 2004 Sep;136(3):504-10. ISSN 0039-6060. PMID: 15349093

  7. Nakamura K, Aebersold R, Bairoch A, Dunn M, Celis J, Hanash S, Hochstrasser D, Humphrey-Smith I, James P, Klose J, LaBaer J, Langen H, Mann M, Parekh R, Patterson S, Pearce C, Poepstorff P, Simpson RJ, Tomlinson I, Tsugita A, Yates J. From genome to proteome--aim of human proteomics Seikagaku. 2004 Oct;76(10):1271-4. PMID: 15580857

  8. Marsischky G, LaBaer J. Many paths to many clones: a comparative look at high-throughput cloning methods. Genome Res. 2004 Oct;14(10B):2020-8. PMID: 15489321

  9. Aguiar JC, LaBaer J, Blair PL, Shamailova VY, Koundinya M, Russell JA, Huang F, Mar W, Anthony RM, Witney A, Caruana SR, Brizuela L, Sacci JB Jr, Hoffman SL, Carucci DJ. High-throughput generation of P. falciparum functional molecules by recombinational cloning. Genome Res. 2004 Oct;14(10B):2076-82. PMID: 15489329

  10. Labaer J, Qiu Q, Anumanthan A, Mar W, Zuo D, Murthy TV, Taycher H, Halleck A, Hainsworth E, Lory S, Brizuela L. The Pseudomonas aeruginosa PA01 gene collection. Genome Res. 2004 Oct;14(10B):2190-200. PMID: 15489342

  11. Pearlberg J, Degot S, Endege W, Park J, Davies J, Gelfand E, Sawyer J, Conery A, Doench J, Li W, Gonzalez L, Boyce FM, Brizuela L, Labaer J, Grueneberg D, Harlow E. Screens using RNAi and cDNA expression as surrogates for genetics in mammalian tissue culture cells. Cold Spring Harb Symp Quant Biol. 2005;70:449-59. PMID: 16869783


  1. Hu Y, Hines LM, Weng H, Zuo D, Rivera M, Richardson A, LaBaer J. Analysis of genomic and proteomic data using advanced literature mining. J Proteome Res. 2003 Jul-Aug;2(4):405-12. PMID: 12938930

  2. Braun P, LaBaer J. High throughput protein production for functional proteomics. Trends Biotechnol. 2003 Sep;21(9):383-8.PMID: 12948670


  1. Braun P, Hu Y, Shen B, Halleck A, Koundinya M, Harlow E, LaBaer J. Proteome-scale purification of human proteins from bacteria. Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2654-9. PMID: 11880620

  2. LaBaer J. Genomics, proteomics, and the new paradigm in biomedical research. Genet Med. 2002 Nov-Dec;4(6 Suppl):2S-9S. PMID: 12544480


Brizuela L, Braun P, LaBaer J. FLEXGene repository: from sequenced genomes to gene repositories for high-throughput functional biology and proteomics. Mol Biochem Parasitol. 2001 Dec;118(2):155-65. PMID: 11738706


  1. LaBaer J, Garrett MD, Stevenson LF, Slingerland JM, Sandhu C, Chou HS, Fattaey A, Harlow E. New functional activities for the p21 family of CDK inhibitors. Genes Dev. 1997 Apr 1;11(7):847-62. PMID: 9106657

  2. Hiyama H, Iavarone A, LaBaer J, Reeves SA. Regulated ectopic expression of cyclin D1 induces transcriptional activation of the cdk inhibitor p21 gene without altering cell cycle progression. Oncogene. 1997 May 29;14(21):2533-42. PMID: 9191053

  3. Hu G, Zhang S, Vidal M, LaBaer J, Xu T, Fearon ER. Mammalian homologs of seven in absentia regulate DCC via the ubiquitin-proteasome pathway. Genes and Development, 11.20 (1997): 2701–2714. PMID: 933433


LaBaer J, Yamamoto KR. Analysis of the DNA-binding affinity, Sequence Specificity and Context Dependence of the Glucocorticoid Receptor Zinc Finger Region. J Molecular Biology, 239.5 (1994): 664–688. PMID: 801498


Garabedian MJ, LaBaer J, Liu W-H, Thomas J. Analysis of protein – DNA Interactions. Gene Transcription - A Practical Approach, Oxford: Oxford University Press, (1993): 243–295. ISBN 0199632928.


LaBaer, J. (1989). "Analysis of protein–DNA Interactions. Rapid sequencing of miniprep DNA using Sequenase and end-labeled sequencing primer." US Biochemicals 15: 19-20.


LaBaer, J., R. Y. Tsien, K. A. Fahey and A. L. DeFranco (1986). "Stimulation of the Antigen Receptor on Wehi-231 B-Lymphoma Cells Results in a Voltage-Independent Increase in Cytoplasmic Calcium." Journal of Immunology 137(6): 1836-1844.PMID: 2427581


  1. Defranco, A. L., J. Labaer, K. A. Fahey and R. Y. Tsien (1985). "Crosslinkage of Membrane Igm Causes an Increase in Cytoplasmic Calcium via Phosphoinositide Hydrolysis." Federation Proceedings 44(4): 1297-1297.

  2. Labaer, J., R. Tsien and A. Defranco (1985). "Anti-Receptor Antibodies Stimulate a Rise in Intracellular Calcium in Lymphocytes-B." Clinical Research 33(2): A381-A381.