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  1. Griffis, T., T. Roman, J.D. Wood3, J. Deventer, L. F. Malaverri, M. Rengifo, J. Del Castillo, Torres5 E. Lilleskov, R. Kolka, R. Chimner, C. Wayson, Hergoualc'h, Kristell, J. M. Baker, D.M. Ricciuto, and H. Cadillo-Quiroz. 2020. Hydrometeorological sensitivities of net ecosystem carbon dioxide 1 and methane exchange of an Amazonian palm swamp peatland. Agricultural and Forestry Management (in submission)

  2. Buessecker, S. *, H. Imanaka, T. Ely, R. Hu, S.J. Romaniello and H. Cadillo-Quiroz*. 2020. An abiotic N2O cycle on the anoxic early Earth. Science communications (Submitted).

  3. Finn D*, Ziv-El M*, van Haren J, Park J, del Aguila-Pasquel J, Urquiza-Muñoz D, Cadillo-Quiroz H*. 2020. Methanogens and methanotrophs show nutrient-dependent community assemblage patterns across peatlands of the Pastaza-Marañón Basin, Peruvian Amazonia. Frontiers in Microbiology. In press


  1. Buessecker*, S.,Tylor, K., Nye, J., Holbert, H.K., Urquiza, J.D., Hartnett, H.E., Glass, J.B., and H. Cadillo-Quiroz*.  2019. The effects of sterilization and inhibition methods on abiotic N2O production from organic-rich tropical soils. Biogeosciences, 16:4601–4612


  1. Wang, S., Zhuang, Q., Lähteenoja, O.*, Draper, F. and Cadillo-Quiroz, H*. 2018. A potential shift from a carbon sink to a source in Amazonian peatlands under a changing climate. Proceedings of the National Academy of Sciences. 115: 12407-12412.


  1. Zhang, G., Browne, P. *, Geng, Z., Cadillo-Quiroz, H., Franz, F. 2017. Diversity and evolution of bacterial symbionts of weevils (Insecta: Curculionoidea). Reposited on BioXrv doi: For submission to Frontiers in Microbiology

  2. Chapman, E.J., Cadillo-Quiroz, H., Childers, D.L., Turetsky, M.R., and. Waldrop, M. 2017. Soil microbial community composition is correlated to soil carbon processing along a boreal wetland formation gradient European Journal of Soil Biology 82: 17-26.

  3. C.X. She, Z.C. Zeng, H. Cadillo-Quiroz*, C. Tong*. 2017. Changes of community structure and abundance of methanogens in soils along a freshwater–brackish water gradient in subtropical estuarine marshes. Geoderma 299: 101:110.

  4. Browne, P., Kyrpides, N., Woyke, T., Goodwin, L., Detter, C., Tamaki, H., Liu, W., Zinder, S., Cadillo-Quiroz, H. 2017. Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. The ISME Journal: 11:87-99.


  1. Zinder S. and Cadillo-Quiroz*, H. 2016. Methanosphaerula. Bergey’s Manual of Systematics of Archaea and Bacteria. 1-5 p, Published by John Wiley & Sons, Inc., in association with Bergey's Manual Trust.

  2. C.X. She, Z.C. Zhang, H. Cadillo-Quiroz*, C. Tong*. 2016. Factors regulating community composition of methanogens and sulfate-reducing bacteria in brackish marsh sediments in the Min River estuary, southeastern China. Estuaries, Coasts and Shelf Sciences 181: 27-38


  1. Cadillo-Quiroz, H.*, Browne, P*., Kyrpides, N., Woyke, T., Goodwin, L., Detter, C., Yavitt, J. and Zinder, S. 2015. Complete genome sequence of Methanosphaerula palustris E1-9CT, a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland. Genome Announcements 3 (6), e01280-15.

  2. Baran, R., Brodie, E., Mayberry-Lewis, M.*, Hummel, E*. Nunes Da Rocha, U., Chakraborty, R., Bowen, B., Karaoz, U., Cadillo-Quiroz, H., Garcia-Pichel, F., Northen, T. 2015. Exometabolite niche partitioning among sympatric soil bacteria. Nature communications 6: 8289.

  3. Brauer S., Cadillo-Quiroz, H., Kyrpides, H., Woyke, T., Goodwin, L., Podell, S., Yavitt, J., Zinder, H. 2015. Genome of Methanoregula boonei reveals adaptation to oligotrophic peatlands environments. SGM Microbiology 161:1572-1581.

  4. Nunes da Rocha, U., Cadillo-Quiroz, H., Karaoz, U., Rajeev, Lara., Klitgord, N., Dunn, S. *, Truong, V. *, Buenrostro, M. *, Bowen, B., Garcia-Pichel, F., Mukhopadhyay, A., Northen, T. and Brodie, E. 2015. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology 6: 277


  1. Krause D., Didelot, X., Cadillo-Quiroz, H., Whitaker, R. 2014. Recombination shapes genome architecture in an organism from the Archaeal domain. Genome Biology and Evolution 6(1): 170-178.

  2. Cadillo-Quiroz, H*., Brauer, S. Goodson, N. Yavitt, J., and Zinder, S.H. 2014. Methanobacterium paludis sp. nov., and a novel strain of Methanobacterium lacus isolated from northern peatlands. International Journal of Systematic and Evolutionary Microbiology 5: 1473-1480.

  3. Yamamoto, K., Tamaki, H., Cadillo-Quiroz, H., Imachi, H., Kyrpides, N., Woyke, T., Goodwin, T., Zinder, S., Kamagata, Y., Wen-Tso, L. 2014. Complete genome sequence of Methanoregula formicica SMSPT, a mesophilic hydrogenotrophic methanogen isolated from a methanogenic upflow anaerobic sludge blanket reactor. Genome Announcements 2(5): e00870-14.

  4. Yamamoto, K., Tamaki, H., Cadillo-Quiroz, H., Imachi, H., Kyrpides, N., Woyke, T., Goodwin, T., Zinder, S., Kamagata, Y., Wen-Tso, L. 2014. Complete genome sequence of Methanolinea tarda NOBI-1T, a hydrogenotrophic methanogen isolated from methanogenic digester sludge. Genome Announcements 2(5): e00876-14.


  1. Browne, P. and Cadillo-Quiroz, H. 2013. Transcription and mRNA regulation patterns of methanogenic Archaea. Archaea, DOI: 10.1155/2013/586369, 11p

  2. Bridgham, S., Cadillo-Quiroz, H., Keller, J., Zhuang, Q. 2013. Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales. Global Change Biology 19:1325-1346. 


  1. Sun, C., Brauer, S., Cadillo-Quiroz, H., Zinder, S., Yavitt, J. 2012. Seasonal Changes in methanogenesis and methanogens in three peatlands New York State. Frontiers in Terrestrial Microbiology. 3(81), doi: 10.3389/fmicb.2012.00081

  2. Cadillo-Quiroz, H., Didelot, X., Held, N. Herrera, A., Darling, A., Reno, M., Krauske, D., and Whitaker, R. 2012. Sympatric Speciation with Gene Flow in Thermophilic Archaea. PLOS Biology 10 (2): e1001265.

  3. Yavitt, J., Yashiro, E., Cadillo-Quiroz, H., and Zinder, S.H. 2012. Composition and distribution of methanogens in peatlands of the central to northern Appalachian mountain region of North America. Biogeochemistry Journal, 109 (1): 117-131.

  4. Sakai, S., Ehara, M., Tseng, I., Yamaguchi, T., Brauer, S., Cadillo-Quiroz, H., Zinder, S., Imachi, H. 2012. Methanolinea mesophila, sp. nov., a hydrogenotrophic methanogen isolated from a rice field in Taiwan, and proposal of the new archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiale. International Journal of Systematic and Evolutionary Microbiology 62:1389-1395.


  1. Nelson, J.L., Fung, J.M. Cadillo-Quiroz, H., Cheng X., Zinder S.H. 2011. A Role for Dehalobacter spp. in the Reductive Dehalogenation of Dichlorobenzenes and Monochlorobenzene. Environmental Science & Technology 45 (16), 6806-6813

  2. Bräuer, S., Cadillo-Quiroz, H., Ward, R.J., Yavitt, J. and S. Zinder. 2011.  Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog. International Journal of Systematic and Evolutionary Microbiology 61 (1): 45-52


  1. Held, N., Herrera, A., Cadillo-Quiroz, H., Whitaker, R. 2010. CRISPR associated diversity within a population of Sulfolobus islandicus. PLOS one, 5 (9): e12988.

  2. Cadillo-Quiroz, H., Yavitt, J., Zinder, S.H., and J. E. Thies. 2010. Diversity and community structure of methanogens and related Archaeainhabiting the rhizoplane of two contrasting plants in an acidic bog. Microbial Ecology 59 (4): 757-767.


  1. Culman, S.W., R. Bukowski, H.G. Gauch, H. Cadillo-Quiroz, and D.H. Buckley. 2009. T-REX: Software for the processing and analysis of T-RFLP data. BMC Bioinformatics journal 10(1): 171.

  2. Cadillo-Quiroz, H., Yavitt, J., and Zinder, S.H. 2009. Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen. International Journal of Systematic and Evolutionary Microbiology 59: 928-935.


  1. Cadillo-Quiroz H., Yashiro E, Yavitt JB, Zinder SH. 2008. Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen. Applied and Environmental Microbiology74: 2059-2068.


  1. Dettling, M., Yavitt, J., Cadillo-Quiroz, H., Sun, C. and Zinder S.H. 2007. Soil-Methanogen Interaction in Two Peatlands (Bog, Fen) in Central New York State. Geomicrobiology Journal. 24 (3): 247-259.


  1. Cadillo-Quiroz H, Bräuer SL, Yashiro E, Sun C, Yavitt JB, and Zinder SH. 2006. Vertical profiles of methanogens in two contrasting acidic peatlands in central New York State, USA.  Environmental Microbiology 8(8):1428-1440.

  2. Bräuer S.L., Cadillo-Quiroz, H., Yashiro, E., Yavitt, J.B., and S.H. Zinder. 2006. Isolation of a novel acidiphilic methanogen from an acidic peat bog.  Nature 442:192-194.


  1. Park, W., Jeon, C.O., Cadillo-Quiroz, H., DeRito, C., and E. L. Madsen. 2004. Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: toxicity of naphthalene and its metabolites. Applied Microbiology and Biotechnology, 64 (3): 429-435.