{"id":220,"date":"2022-01-13T16:33:21","date_gmt":"2022-01-13T23:33:21","guid":{"rendered":"https:\/\/biodesign.asu.edu\/cxfel\/?page_id=220"},"modified":"2023-03-08T12:06:30","modified_gmt":"2023-03-08T19:06:30","slug":"publications","status":"publish","type":"page","link":"https:\/\/biodesign.asu.edu\/cxfel\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<div id=\"unityblocks-hero\" class=\"wp-block-unityblocks-hero\" data-herotype=\"heading-hero\" data-image=\"{&quot;url&quot;:&quot;https:\/\/biodesign.asu.edu\/cxfel\/wp-content\/uploads\/sites\/5\/2022\/01\/cxfel-hero.jpg&quot;,&quot;altText&quot;:&quot;&quot;,&quot;cssClass&quot;:[],&quot;size&quot;:&quot;medium&quot;}\" data-subtitle=\"{&quot;text&quot;:&quot;&quot;,&quot;highlightColor&quot;:&quot;white&quot;,&quot;maxWidth&quot;:&quot;&quot;,&quot;cssClass&quot;:[]}\" data-title=\"{&quot;text&quot;:&quot;CXFEL: Compact X-ray Free Electron Laser&quot;,&quot;highlightColor&quot;:&quot;gold&quot;,&quot;maxWidth&quot;:&quot;&quot;,&quot;cssClass&quot;:[]}\" data-contents=\"[{&quot;text&quot;:&quot;&quot;,&quot;maxWidth&quot;:&quot;&quot;,&quot;cssClass&quot;:[],&quot;highlightColor&quot;:&quot;white&quot;}]\" data-contentscolor=\"white\"><\/div>\n\n\n<div class=\"wp-bootstrap-blocks-container container mb-0 mb-6 mb-xl-12\">\n\t\n<div class=\"wp-bootstrap-blocks-row row mt-4 mb-5\">\n\t\n\n<div class=\"col-12 col-md-12\">\n\t\t\t\n<div class=\"yoast-breadcrumbs\"><span><span><a href=\"https:\/\/biodesign.asu.edu\/\">Home<\/a><\/span> \/ <span><a href=\"https:\/\/biodesign.asu.edu\/about-biodesign\/\">About Biodesign<\/a><\/span> \/ <span><a href=\"https:\/\/biodesign.asu.edu\/facilities\/\">Facilities<\/a><\/span> \/ <span><a href=\"https:\/\/biodesign.asu.edu\/cxfel\/\">CXFEL<\/a><\/span> \/ <span class=\"breadcrumb_last\" aria-current=\"page\">Publications<\/span><\/span><\/div>\n\t<\/div>\n\n<\/div>\n\n\n<div class=\"wp-bootstrap-blocks-row row justify-content-between\">\n\t\n\n<div class=\"col-12 col-md-3\">\n\t\t\t\n<div aria-controls=\"sidebar-menu-cxfel-nav\" aria-expanded=\"false\" class=\"sidebar-toggler\" data-target=\"#sidebar-menu-cxfel-nav\" data-toggle=\"collapse\"><p>Select Section <\/p><span class=\"fas fa-chevron-up\" \/><\/div><nav class=\"sidebar collapse\" id=\"sidebar-menu-cxfel-nav\" aria-label=\"Secondary\"> <div class=\"nav-link-container\"><a id=\"menu-item-294\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-home nav-link\">Overview<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-261\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/about\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">About<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-266\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/research\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Research<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-267\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/team\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Team<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-264\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/news\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">News<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-265\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/publications\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Publications<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-263\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/get-involved\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Get Involved<\/a><\/div><\/li>\n<\/nav>\n\n\t<\/div>\n\n\n\n<div class=\"col-12 col-md-8\">\n\t\t\t\n\n<h2 class=\"wp-block-heading\">Publications<\/h2>\n\n\n\n<p>Our team&#8217;s XFEL-related articles are listed below..<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2023<\/h3>\n\n\n\n<p>Schmidt, M.; Malla, T. N.; Zielinski, K.; Aldama, L.; Bajt, S.; Feliz, D.; Hayes, B.; Hunter, M.; Kupitz, C.; Lisova, S.; Knoska, J.; Martin-Garcia, J.; Mariani, V.; Pandey, S.; Poudyal, I.; Sierra, R.; Tolstikova, A.; Yefanov, O.; Yoon, C. H.; Ourmazd, A.; Fromme, P.; Schwander, P.; Barty, A.; Chapman, H.; Stojkovic, E.; Batyuk, A.; Boutet, S.; Phillips, G.; Pollack, L., Heterogeneity in the M. tuberculosis beta-Lactamase Inhibition by Sulbactam. Res Sq 2023.<\/p>\n\n\n\n<p>Jernigan, R. J.; Logeswaran, D.; Doppler, D.; Nagaratnam, N.; Sonker, M.; Yang, J. H.; Ketawala, G.; Martin-Garcia, J. M.; Shelby, M. L.; Grant, T. D.; Mariani, V.; Tolstikova, A.; Sheikh, M. Z.; Yung, M. C.; Coleman, M. A.; Zaare, S.; Kaschner, E. K.; Rabbani, M. T.; Nazari, R.; Zacks, M. A.; Hayes, B.; Sierra, R. G.; Hunter, M. S.; Lisova, S.; Batyuk, A.; Kupitz, C.; Boutet, S.; Hansen, D. T.; Kirian, R. A.; Schmidt, M.; Fromme, R.; Frank, M.; Ros, A.; Chen, J. J.; Botha, S.; Fromme, P., Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser. Structure 2023, 31 (2), 138-151 e5.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2022<\/h3>\n\n\n\n<p>Sulbactam Tek Narsingh Malla, Kara Zielinski, Luis Aldama, Sasa Bajt, Denisse Feliz, Brendon Hayes, Mark Hunter, Christopher Kupitz, Stella Lisova, Juraj Knoska, Jose Martin-Garcia, Valerio Mariani, Suraj Pandey, Ishwor Poudyal, Raymond G. Sierra, Alexandra Tolstikova, Oleksandr Yefanov, Chung Hong Yoon, Abbas Ourmazd, Petra Fromme, Peter Schwander, Anton Barty, Henry N. Chapman, Emina A. Stojkovic, Alex Batyuk, S\u00e9bastien Boutet, George N. Phillips Jr., Lois Pollack, Marius Schmidt (2022)\u201cHeterogeneity in the M. tuberculosis \u03b2-lactamase inhibition by Sulbactam\u201c bioRxiv 2022.12.06.519319<\/p>\n\n\n\n<p>Michael F. Brown, Thomas D. Grant, Suchithranga M.D.C. Perera, Alan Grossfield, Petra Fromme, Richard A. Kirian, et al. (2022). &#8221; Functional dynamics of G-protein-coupled receptor shown by femtosecond X-ray scattering\u201d Biophysical Journal 2022 Vol 121, Issue 3, Sup 1, 193A<\/p>\n\n\n\n<p>C.Swathi K. Menon, Konstantinos Karpos, Thomas D. Grant, Petra Fromme, Richard A. Kirian, Michael F. Brown, et al. (2022). &#8221; Time-resolved functional expansion of visual rhodopsin detected by x-ray scattering\u201d Biophysical Journal 2022 Vol 121, Issue 3, Sup 1, 285A-286A<\/p>\n\n\n\n<p>M. Sonker, D. Doppler, A. Egatz-Gomez, S. Zaare, M. T. Rabbani, A. Manna, et al. (2022). &#8220;Electrically stimulated droplet injector for reduced sample consumption in serial crystallography\u201d Biophys Rep (N Y) 2022 Vol. 2 Issue 4 Pages 100081<\/p>\n\n\n\n<p>Doppler, D., M. T. Rabbani, R. Letrun, J. Cruz Villarreal, D. H. Kim, S. Gandhi, A. Egatz-Gomez, M. Sonker, J. Chen, F. H. M. Koua, J. Yang, M. Youssef, V. Mazalova, S. Bajt, M. L. Shelby, M. A. Coleman, M. O. Wiedorn, J. Knoska, S. Schon, T. Sato, M. S. Hunter, A. Hosseinizadeh, C. Kuptiz, R. Nazari, R. C. Alvarez, K. Karpos, S. Zaare, Z. Dobson, E. Discianno, S. Zhang, J. D. Zook, J. Bielecki, R. de Wijn, A. R. Round, P. Vagovic, M. Kloos, M. Vakili, G. K. Ketawala, N. E. Stander, T. L. Olson, K. Morin, J. Mondal, J. Nguyen, J. D. Meza-Aguilar, G. Kodis, S. Vaiana, J. M. Martin-Garcia, V. Mariani, P. Schwander, M. Schmidt, M. Messerschmidt, A. Ourmazd, N. Zatsepin, U. Weierstall, B. D. Bruce, A. P. Mancuso, T. Grant, A. Barty, H. N. Chapman, M. Frank, R. Fromme, J. C. H. Spence, S. Botha, P. Fromme, R. A. Kirian and A. Ros (2022). &#8220;Co-flow injection for serial crystallography at X-ray free-electron lasers.&#8221; J Appl Crystallogr 55(Pt 1): 1-13.<\/p>\n\n\n\n<p>Khokhriakov, I., O. Merkulova, A. Nozik, P. Fromme and V. Mazalova (2022). &#8220;A novel solution for controlling hardware components of accelerators and beamlines.&#8221; J Synchrotron Radiat 29(Pt 3): 644-653.<\/p>\n\n\n\n<p>Martin-Garcia, J. M., S. Botha, H. Hu, R. Jernigan, A. Castellvi, S. Lisova, F. Gil, B. Calisto, I. Crespo, S. Roy-Chowdhury, A. Grieco, G. Ketawala, U. Weierstall, J. Spence, P. Fromme, N. Zatsepin, D. R. Boer and X. Carpena (2022). &#8220;Serial macromolecular crystallography at ALBA Synchrotron Light Source.&#8221; J Synchrotron Radiat 29(Pt 3): 896-907.<\/p>\n\n\n\n<p>Zhang, S., D. T. Hansen, J. M. Martin-Garcia, J. D. Zook, S. Pan, F. M. Craciunescu, J. C. Burnett, Jr. and P. Fromme (2022). &#8220;Purification, characterization, and preliminary serial crystallography diffraction advances structure determination of full-length human particulate guanylyl cyclase A receptor.&#8221; Sci Rep 12(1): 11824.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2021<\/h3>\n\n\n\n<p>Burak Guzelturk, <em>et al.<\/em>, <a href=\"https:\/\/www.nature.com\/articles\/s41563-020-00865-5\">Visualization of dynamic polaronic strain fields in hybrid lead halide perovskites<\/a>, 20, 618-623 (2021), DOI :10.1038\/s41563-020-00865-5<\/p>\n\n\n\n<p>Gisriel, C., Fromme, P. and Martin-Garcia, J. M. (2021). \u201cMethods for Crystallization and Structural Determination of M-T7 Protein from Myxoma Virus.\u201d In Viruses as Therapeutics (pp. 125-162). Humana, New York, NY.<\/p>\n\n\n\n<p>Grant, T. D., Perera, S. M., Salas-Estrada, L. A., Struts, A. V., Chawla, U., Fried, S. D., Weerasinghe, N., Karpos, K., Meza, D., Zatsepin, N. A. and Grossfield, A., (2021). \u201cUltrafast Membrane Protein Dynamics Revealed by X-Ray Scattering with a Femtosecond Free-Electron Laser.\u201d Biophysical Journal, 120(3), p.133a.<\/p>\n\n\n\n<p>Han, H., Round, E., Schubert, R., G\u00fcl, Y., Makroczyov\u00e1, J., Meza, D., Heuser, P., Aepfelbacher, M., Bar\u00e1k, I., Betzel, C., Fromme, P., Kursula, I., Nissen, P., Tereschenko, E., Schulz, J., Uetrecht, C., Ulicny, J., Wilmanns, M., Hajdu, J., Lamzin, V. S. and Lorenzen, K. (2021). \u201cThe XBI BioLab for life science experiments at the European XFEL.\u201d Journal of Applied Crystallography, 54(1).<\/p>\n\n\n\n<p>Lucas, A.R., Gisriel, C., Fromme, P. and Martin-Garcia, J. M. (2021). \u201cMethods for Crystallization and Structural Determination of M-T7 Protein from Myxoma Virus\u201d (No. PUBDB-2021-04846). EMBL-User.<\/p>\n\n\n\n<p>Menon, C. S. K., Karpos, K., Grant, T. D., Struts, A. V., Fried, S. D., Perera, S. M., Kosheleva, I. V., Salas-Estrada, L., Grossfield, A., Fromme, P., Kirian, R. A. and Brown, M. F. (2021). \u201cFunctional Expansion of G-Protein-Coupled Receptor Shown by Time-Resolved X-Ray Scattering.\u201d Biophysical Journal, 120(3), p.132a.<\/p>\n\n\n\n<p>Nagaratnam, N., Delker, S. L., Jernigan, R., Edwards, T. E., Snider, J., Thifault, D., Williams, D., Nannenga, B. L., Stofega, M., Sambucetti, L., Hsieh, J. J., Flint, A. J., Fromme, P. and Martin-Garcia, J. M. (2021). \u201cStructural insights into the function of the catalytically active human Taspase1.\u201d Structure, 29(8), pp.873-885.<\/p>\n\n\n\n<p>Pandey, S., Calvey, G., Katz, A. M., Malla, T. N., Koua, F. H., Martin-Garcia, J. M., Poudyal, I., Yang, J. H., Vakili, M., Yefanov, O., Zielinski, K.A., Sasa, B., Awel, S., Doerner, K., Frank M., Gelisio, L., Jernigan, R., Kirkwood., H., Kloos, M., Koliyadu, J., Mariani., V., Miller, M. D., Mills, G., Nelson, G., Olmos Jr, J. L., Sadri, A., Sato, A., Tolstikova, A., Xu, W., Ourmazd, A., Spence, J. C. H., Schwander, P., Barty, A., Chapman, H. N., Fromme, P., Mancuso, A. P., Phillips Jr, G. N., Bean, R., Pollack, L. and Schmidt, M. (2021). \u201cObservation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography.\u201d IUCrJ, 8(6).<\/p>\n\n\n\n<p>Teitelbaum, S. W., T. C. Henighan, H. Liu, M. P. Jiang, D. Zhu, M. Chollet, T. Sato, \u00c9. D. Murray, S. Fahy, S. O&#8217;Mahony, T.. P. Bailey, C. Uher, M. Trigo, and D. A. Reis. (2021)  Measurements of nonequilibrium interatomic forces using time-domain x-ray scattering, Physical Review B <strong>103<\/strong> (18), L180101 (2021) DOI: 10.1103\/PhysRevB.103.L180101<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2020<\/h3>\n\n\n\n<p>Basu, S., Fromme, P. and Fromme, R. (2020). \u201cApplication of Hard\u2010X\u2010Ray Free\u2010Electron Lasers for Static and Dynamic Processes in Structural Biology.\u201d Structural Biology in Drug Discovery: Methods, Techniques, and Practices, pp.633-647.<\/p>\n\n\n\n<p>Brehm, G., Echelmeier, A., Coe, J., Conrad, C. E., Nelson, G., Villarreal, J. C., Weierstall, U., Spence, J., K\u00f6ster, S., Fromme, P. and Ros, A. (2020). \u201cCombined hydrodynamic mixer and gas dynamic virtual nozzle devices for serial femtosecond crystallography.\u201d In 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017 (pp. 1495-1496). Chemical and Biological Microsystems Society.<\/p>\n\n\n\n<p>Echelmeier, A., <em>et. al.<\/em>&nbsp;(2020). &#8220;Segmented flow generator for serial crystallography at the European X-ray free electron laser.&#8221; Nature Commun 11(1):&nbsp; 4511.<\/p>\n\n\n\n<p>Graves, W., Fromme, P., Holl, M., Malin, L., Messerschmidt, M., Nanni, E., Sandhu, A., Tantawi, S., Tilton, S. and Spence, J. (2020). \u201cThe ASU Compact XFEL Project.\u201d Bulletin of the American Physical Society.&nbsp;<\/p>\n\n\n\n<p>Grant, T. D., Perera, S. M., Salas-Estrada, L. A., Struts, A. V., Chawla, U., Xu, X., Fried, S. D., Weerasinghe, N., Mendez, D., Alvarez, R., Karpos, K., K., Lisova, S., Zaare, S., Nazari, R., Zatsepsin, N. A., Singharoy, A., Boutet, S., Carbajo. S., Hunter, M. S., Liang, M., Seaberg, M. D., Fromme, R., Fromme, P., Grossfield, A., Kirian, R. A., and Brown, M. F. (2020). \u201cMembrane Protein Dynamics Revealed by X-Ray Scattering with a Femtosecond Free-Electron Laser.\u201d Biophysical Journal, 118(3), p.365a.<\/p>\n\n\n\n<p>Jernigan, R. J., Nagaratnam, N., Thifault, D., Delker, S., Zacks, M., Edwards, T., Sambucetti, L., Tong, L., Fromme, R., Schneider, J., Hsieh, J., Mroczkowski, B., Flint, A., Fromme, P. and Garcia, J. M. (2020). \u201cNew Structural Insights into the Function of the Active Full Length Human Taspase1: A Novel Anticancer Therapeutic Target.\u201d Biophysical Journal, 118(3), p.42a.<\/p>\n\n\n\n<p>Layton, J., Nagaratnam, N., Jernigan, R. J., Schneider, J., Flint, A., Mroczkowski, B., Fromme, P., Garcia, J. M. and Singharoy, A. (2020). \u201cMolecular Dynamics Simulations for Improving Crystal Quality and Illuminating the Function of Taspase1: A Therapeutic Target.\u201d Biophysical Journal, 118(3), p.507a.<\/p>\n\n\n\n<p>Nagaratnam, N., Tang, Y., Botha, S., Saul, J., Li, C., Hu, H., Zaare, S., Hunter, M., Lowry, D., Weierstall, U., Zatsepin, N., Spence, J. C. H, Qiu, J., LaBaer, J., Fromme, P. and Martin-Garcia, J.M. (2020). \u201cEnhanced X-ray diffraction of in vivo-grown \u03bcNS crystals by viscous jets at XFELs.\u201d Acta Crystallographica Section F: Structural Biology Communications, 76(6), pp.278-289.<\/p>\n\n\n\n<p>Nass, K., <em>et. al.,<\/em> (2020). \u201cIn cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of genuine co-factors\u201d. Nature communications, 11(1), pp.1-13.<\/p>\n\n\n\n<p>Pandey, S., <em>et. al.&nbsp;<\/em>(2020). \u201cTime-resolved serial femtosecond crystallography at the European XFEL.\u201d Nature methods, 17(1), pp.73-78.<\/p>\n\n\n\n<p>Rajan Plumley, <em>et al.<\/em>, Speckle correlation as a monitor of X-ray free-electron laser induced crystal lattice deformation, Journal of Synchrotron Radiation <strong>27<\/strong> (6) (2020).<\/p>\n\n\n\n<p>Salas-Estrada, L. A., Grant, T. D., Perera, S. M., Struts, A. V., Chawla, U., Xu, X., Fried, S.D., Weerasinghe, N., Mendez, D., Alvarez, R., Karpos, K., Lisova, S., Zaare, S., Nazari, R., Zatsepsin, N. A., Singharoy, A., Boutet, S., Carbajo. S., Hunter, M. S., Liang, M., Seaberg, M. D., Fromme, R., Fromme, P., Kirian, R. A., Brown, M. F., and Grossfield, A. (2020). \u201cRhodopsin&#8217;s Ultra-Fast Activation Dynamics in Bilayer and Micelle Environments.\u201d Biophysical Journal, 118(3), p.92a.<\/p>\n\n\n\n<p>Tang, Y., Saul, J., Nagaratnam, N., Martin-Garcia, J. M., Fromme, P., Qiu, J. and LaBaer, J. (2020). \u201cConstruction of gateway-compatible baculovirus expression vectors for high-throughput protein expression and in vivo microcrystal screening.\u201d Scientific Reports, 10(1), pp.1-15.<\/p>\n\n\n\n<p>Zook, J., Shekhar, M., Hansen, D., Conrad, C., Grant, T., Gupta, C., White, T., Barty, A., Basu, S., Zhao, Y., Zatsepin, N., Ishchenko, A., Batyuk, A., Gati, C., Li, C., Galli, L., Coe, J., Hunter, M., Liang, M., Weierstall, U., Nelson, G., James, D., Stauch, B., Craciunescu, F., Thifault, D., Liu, W., Cherezov, V., Singharoy, A., and Fromme, P Electric Triggering for Enhanced Control of Droplet Generation.. (2020). \u201cXFEL and NMR Structures of Francisella Lipoprotein Reveal Conformational Space of Drug Target against Tularemia.\u201d Structure. 28 (5), 540-547<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2019<\/h3>\n\n\n\n<p>I. Ishigami<em> et al.<\/em>, Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase. <em>Proc Natl Acad Sci U S A<\/em><strong>116<\/strong>, 3572-3577 (2019).<\/p>\n\n\n\n<p>Echelmeier, A., Kim, D., Cruz Villarreal, J., Coe, J., Quintana, S., Brehm, G., Egatz-Gomez, A., Nazari, R., Sierra, R.G., Koglin, J.E., Batyuk, A., Hunter, M.S, Boutet, S, Zatsepin,A., Kirian, R.A. , Grant, T. D., Fromme, P and Ros, A. (2019).&nbsp; \u201c3D printed droplet generation devices for serial femtosecond crystallography enabled by surface coating.\u201d Journal of Applied Crystallography, 52(5).<\/p>\n\n\n\n<p>E.R. Shanblatt, Y. Sung, R. Gupta, B.J. Nelson, S. Leng, W.S. Graves, C.H. McCollough, \u2018A forward model for propagation-based phase contrast x-ray imaging in parallel- and cone-beam geometry\u2019 Optics Express (27), pp. 4504-4521<\/p>\n\n\n\n<p>Gisriel, C., <em>et. al.<\/em> (2019) \u201cMembrane protein megahertz crystallography at the European XFEL.\u201d Nature Communications 10(1), 5021.<\/p>\n\n\n\n<p>Graves, W., Chang, S., Dwyer, D., Fromme, P., Holl, M., Levin, B., Malin, L., Vincent, J., Spence, J., and Nanni, E. (2019) \u201cNanopatterned electron beams for temporal coherence and deterministic phase control of x-ray free-electron lasers.\u201d (2019) arXiv preprint arXiv:1906.01525.<\/p>\n\n\n\n<p>Ishigami, I., A. Lewis-Ballester, A. Echelmeier, G. Brehm, N. A. Zatsepin, T. D. Grant, J. D. Coe, S. Lisova, G. Nelson, S. Zhang, Z. F. Dobson, S. Boutet, R. G. Sierra, A. Batyuk, P. Fromme, R. Fromme, J. C. H. Spence, A. Ros, S. R. Yeh and D. L. Rousseau (2019). &#8220;Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase.&#8221; Proc Natl Acad Sci U S A 116(9): 3572-3577.<\/p>\n\n\n\n<p>Jensen, S. C., B. Sullivan, D. A. Hartzler, J. M. Aguilar, S. Awel, S. Bajt, S. Basu, R. Bean, H. N. Chapman, C. Conrad, M. Frank, R. Fromme, J. M. Martin-Garcia, T. D. Grant, M. Heymann, M. S. Hunter, G. Ketawala, R. A. Kirian, J. Knoska, C. Kupitz, X. Li, M. Liang, S. Lisova, V. Mariani, V. Mazalova, M. Messerschmidt, M. Moran, G. Nelson, D. Oberthur, A. Schaffer, R. G. Sierra, N. Vaughn, U. Weierstall, M. O. Wiedorn, P. L. Xavier, J. H. Yang, O. Yefanov, N. A. Zatsepin, A. Aquila, P. Fromme, S. Boutet, G. T. Seidler and Y. Pushkar (2019). &#8220;X-ray Emission Spectroscopy at X-ray Free Electron Lasers: Limits to Observation of the Classical Spectroscopic Response for Electronic Structure Analysis.&#8221; J Phys Chem Lett 10(3): 441-446.<\/p>\n\n\n\n<p>Martin-Garcia, J. M., L. Zhu, D. Mendez, M. Y. Lee, E. Chun, C. Li, H. Hu, G. Subramanian, D. Kissick, C. Ogata, R. Henning, A. Ishchenko, Z. Dobson, S. Zhang, U. Weierstall, J. C. H. Spence, P. Fromme, N. A. Zatsepin, R. F. Fischetti, V. Cherezov and W. Liu (2019). &#8220;High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source.&#8221; IUCrJ 6(Pt 3): 412-425.<\/p>\n\n\n\n<p>Martin-Garcia, J., Spence, J. and Fromme, P. (2019). \u201cLatest Advances on Serial Crystallography at XFELs and Synchrotron Sources.\u201d Foundations of Crystallography. Acta Cryst, A75, a109.<\/p>\n\n\n\n<p>Salas, L., Mendez, D., Meza-Aguilar, J.D., Perera, S.M., Singharoy, A., Struts, A.V., Zatsepin, N.A., Kirian, R.A., Grant, T.D., Fromme, P. and Brown, M.F. (2019). &#8220;Study of Ultra-Fast Rhodopsin Activation Dynamics with Molecular Dynamics Simulations.&#8221; Biophysical Journal, 116(3), 205a.<\/p>\n\n\n\n<p>Stander, N., Fromme, P. and Zatsepin, N. 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Gumprecht, J. Hajdu, C.Y. Hampton, A. Hartmann, R. Hartmann, S. Hau-Riege, G. Hauser, H. Hirsemann, P. Holl, J.M. Holton, A. H\u00f6mke, L. Johansson, N. Kimmel, S. Kassemeyer, F. Krasniqi, K.-U. K\u00fchnel, M. Liang, L. Lomb, E. Malmerberg, S. Marchesini, A.V. Martin, F.R.N.C. Maia, M. Messerschmidt, K. Nass, C. Reich, R. Neutze, D. Rolles, B. Rudek, A. Rudenko, I. Schlichting, C. Schmidt, K.E. Schmidt, J. Schulz, M.M. Seibert, R.L. Shoeman, R. Sierra, H. Soltau, D. Starodub, F. Stellato, S. Stern, L. Str\u00fcder, N. Timneanu, J. Ullrich, X. Wang, G.J. Williams, G. Weidenspointner, U. Weierstall, C. Wunderer, A. Barty, J.C.H. Spence, and H.N. Chapman, Time-resolved protein nanocrystallography using an X-ray free-electron laser. Optics Express, 2012. 20(3): p. 2706-2716.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2011<\/h3>\n\n\n\n<p>H. N. Chapman<em> et al.<\/em>, Femtosecond X-ray protein nanocrystallography. <em>Nature<\/em><strong>470<\/strong>, 73-77 (2011).<\/p>\n\n\n\n<p>Seibert, M.M., <em>et. al.<\/em>&nbsp;2011. 470(7332): p. 78-81.<\/p>\n\n\n\n<p>Lomb, L., T.R.M. Barends, S. Kassemeyer, A. Aquila, S.W. Epp, B. Erk, L. Foucar, R. Hartmann, B. Rudek, D. Rolles, A. Rudenko, R.L. Shoeman, J. Andreasson, S. Bajt, M. Barthelmess, A. Barty, M.J. Bogan, C. Bostedt, J.D. Bozek, C. Caleman, R. Coffee, N. Coppola, D.P. DePonte, R.B. Doak, T. Ekeberg, H. Fleckenstein, P. Fromme, M. Gebhardt, H. Graafsma, L. Gumprecht, C.Y. Hampton, A. Hartmann, G. Hauser, H. Hirsemann, P. Holl, J.M. Holton, M.S. Hunter, W. Kabsch, N. Kimmel, R.A. Kirian, M. Liang, F.R.N.C. Maia, A. Meinhart, S. Marchesini, A.V. Martin, K. Nass, C. Reich, J. Schulz, M.M. Seibert, R. Sierra, H. Soltau, J.C.H. Spence, J. Steinbrener, F. Stellato, S. Stern, N. Timneanu, X. Wang, G. Weidenspointner, U. Weierstall, T.A. White, C. Wunderer, H.N. Chapman, J. Ullrich, L. Str\u00fcder, and I. Schlichting, Radiation damage in protein serial femtosecond crystallography using an X-ray free-electron laser. Physical Review B, 2011. 84(21): p. 214111.<\/p>\n\n\n\n<p>Kirian, R.A., T.A. White, J.M. Holton, H.N. Chapman, P. Fromme, A. Barty, L. Lomb, A. Aquila, F.R.N.C. Maia, A.V. Martin, R. Fromme, X. Wang, M.S. Hunter, K.E. Schmidt, and J.C.H. Spence, Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals. Acta Crystallographica Section A: Foundations of Crystallography, 2011. 67(Part 2): p. 131-140.<\/p>\n\n\n\n<p>Hunter, M.S. and P. Fromme, Toward structure determination using membrane\u2013protein nanocrystals and microcrystals. Methods, 2011. 55(4): p. 387-404.<\/p>\n\n\n\n<p>Hunter, M.S., D.P. DePonte, D.A. Shapiro, R.A. Kirian, X. Wang, D. Starodub, S. Marchesini, U. Weierstall, R.B. Doak, J.C.H. Spence, and P. Fromme, X-ray Diffraction from Membrane Protein Nanocrystals. Biophysical Journal, 2011. 100(1): p. 198-206.<\/p>\n\n\n\n<p>Fromme, P. and J.C.H. Spence, Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination. Current Opinion in Structural Biology, 2011. 21(4): p. 509-516.<\/p>\n\n\n\n<p>Chapman, H.N., <em>et. al<\/em>. Nature, 2011. 470(7332): p. 73-77.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2010<\/h3>\n\n\n\n<p>Kirian, R.A., X. Wang, U. Weierstall, K.E. Schmidt, J.C.H. Spence, M. Hunter, P. Fromme, T. White, H.N. Chapman, and J. Holton, Femtosecond protein nanocrystallography\u2014data analysis methods. Optics express, 2010. 18(6): p. 5713-5723.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2009<\/h3>\n\n\n\n<p>Weierstall, U., R.B. Doak, J.C.H. Spence, D. Starodub, D. Shapiro, P. Kennedy, J. Warner, G.G. Hembree, P. Fromme, and H.N. Chapman, Droplet streams for serial crystallography of proteins. Experiments in Fluids, 2008. 44(5): p. 675-689.<\/p>\n\n\n\n<p>Starodub, D., P. Rez, G. Hembree, M. Howells, D. Shapiro, H.N. Chapman, P. Fromme, K. Schmidt, U. Weierstall, R.B. Doak, and J.C.H. Spence, Dose, exposure time and resolution in serial X-ray crystallography. Journal of synchrotron radiation, 2008. 15(1): p. 62-73.<\/p>\n\n\n\n<p>Shapiro, D.A., H.N. Chapman, D. DePonte, R.B. Doak, P. Fromme, G. Hembree, M. Hunter, S. Marchesini, K. Schmidt, J. Spence, D. Starodub, and U. Weierstall, Powder diffraction from a continuous microjet of submicrometer protein crystals. Journal of Synchrotron Radiation, 2008. 15(6): p. 593-599.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2008<\/h3>\n\n\n\n<p>Spence, J.C.H., K. Schmidt, J.S. Wu, G. Hembree, U. Weierstall, B. Doak, and P. Fromme, Diffraction and imaging from a beam of laser-aligned proteins: resolution limits. Acta Crystallographica Section A: Foundations of Crystallography, 2005. 61(2): p. 237-245.&nbsp;<\/p>\n\n\t<\/div>\n\n<\/div>\n\n<\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":8,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"uds_featured_image":null,"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications | CXFEL | ASU Biodesign Institute<\/title>\n<meta name=\"description\" content=\"View a list of our recent publications\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/biodesign.asu.edu\/cxfel\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" 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