{"id":29,"date":"2023-02-08T21:20:27","date_gmt":"2023-02-08T21:20:27","guid":{"rendered":"https:\/\/biodesign.qa.rtd.asu.edu\/cellular-evolution\/?page_id=29"},"modified":"2024-05-22T22:36:55","modified_gmt":"2024-05-22T22:36:55","slug":"publications","status":"publish","type":"page","link":"https:\/\/biodesign.asu.edu\/cellular-evolution\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<div id=\"unityblocks-hero\" class=\"wp-block-unityblocks-hero hide-content\" data-herotype=\"heading-hero\" data-image=\"{&quot;url&quot;:&quot;https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/03\/cellular-evolution-publications-hero-1920.jpg&quot;,&quot;altText&quot;:&quot;Center Director Michael Lynch writes on a whiteboard&quot;,&quot;cssClass&quot;:[],&quot;size&quot;:&quot;medium&quot;}\" data-subtitle=\"{&quot;text&quot;:&quot;&quot;,&quot;highlightColor&quot;:&quot;white&quot;,&quot;maxWidth&quot;:&quot;&quot;,&quot;cssClass&quot;:[]}\" data-title=\"{&quot;text&quot;:&quot;Biological Integration Institute for Mechanisms of Cellular Evolution&quot;,&quot;highlightColor&quot;:&quot;gold&quot;,&quot;maxWidth&quot;:&quot;&quot;,&quot;cssClass&quot;:[]}\" data-contents=\"[{&quot;text&quot;:&quot;&quot;,&quot;maxWidth&quot;:&quot;&quot;,&quot;cssClass&quot;:[],&quot;highlightColor&quot;:&quot;white&quot;}]\" data-contentscolor=\"white\"><\/div>\n\n\n<div class=\"wp-bootstrap-blocks-container container mb-0 my-2 my-md-6 my-xl-10\">\n\t\n<div class=\"wp-bootstrap-blocks-row row justify-content-between\">\n\t\n\n<div class=\"col-12 col-md-3\">\n\t\t\t\n\n<div class=\"wp-block-group mb-4 is-layout-constrained wp-block-group-is-layout-constrained\"><div aria-controls=\"sidebar\" aria-expanded=\"false\" class=\"sidebar-toggler\" data-target=\"#sidebar\" data-toggle=\"collapse\"><p>Select Section <\/p><span class=\"fas fa-chevron-up\" \/><\/div><nav class=\"sidebar collapse\" id=\"sidebar\" aria-label=\"Secondary\"> <div class=\"nav-link-container\"><a id=\"menu-item-57\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-home nav-link\">Overview<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-41\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/research\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Research<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-40\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/publications\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Publications<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-39\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/training-and-outreach\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Training and Outreach<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-38\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/people\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">People<\/a><\/div><\/li>\n <div class=\"nav-link-container\"><a id=\"menu-item-37\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/jobs\/\" class=\"menu-item menu-item-type-post_type menu-item-object-page nav-link\">Jobs<\/a><\/div><\/li>\n<\/nav>\n<\/div>\n\n\t<\/div>\n\n\n\n<div class=\"col-12 col-md-8\">\n\t\t\t\n<div class=\"wp-bootstrap-blocks-row row\">\n\t\n\n<div class=\"col-12 col-md-7\">\n\t\t\t\n\n<h2 class=\"wp-block-heading mt-0\">Publications<\/h2>\n\n\t<\/div>\n\n<\/div>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"540\" height=\"720\" src=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2024\/05\/img_7462_720.jpg\" alt=\"\" class=\"wp-image-999233\" srcset=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2024\/05\/img_7462_720.jpg 540w, https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2024\/05\/img_7462_720-225x300.jpg 225w\" sizes=\"(max-width: 540px) 100vw, 540px\" \/><\/figure>\n\n\n\n<h3 class=\"wp-block-heading\">Open access to \u2018The Origins of Cellular Architecture\u2019<\/h3>\n\n\n\n<p>We have taken on one of the last uncharted fields in evolution: integrating evolutionary biology with cell biology. This sequel to The Origins of Genome Architecture brings evolutionary theory to bear on a diversity of observations on the functional and structural features of cells.<\/p>\n\n\n\n\t<div class=\"uds-button my-4\">\n\n\t\t\t\n\t\t\t<a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/03\/Outline2022_Sept2022-1.pdf\" class=\"btn btn-md btn-maroon \"   >Outline<\/a>\n\t\n\t\t<\/div>\n\n\n\n<div id=\"dropdown-section\" class=\"wp-block-group accordion mt-6 is-layout-constrained wp-block-group-is-layout-constrained\"><div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_546a63b32ba6c5a7e5c650192a9ea93c\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_546a63b32ba6c5a7e5c650192a9ea93c\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_546a63b32ba6c5a7e5c650192a9ea93c\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_546a63b32ba6c5a7e5c650192a9ea93c\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>Introduction<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_546a63b32ba6c5a7e5c650192a9ea93c\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_546a63b32ba6c5a7e5c650192a9ea93c\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch1_Introduction_FINAL.pdf\">Chapter 1. Evolutionary Cell Biology<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch2_Origin-of-Cells_FINAL.pdf\">Chapter 2. The Origin of Cells<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch3_LinesOfDescent_FINAL-1.pdf\">Chapter 3. The Major Lines of Descent<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div>\n\n<div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_a8f2547d0f8b1886c4de3de1d8cb8206\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_a8f2547d0f8b1886c4de3de1d8cb8206\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_a8f2547d0f8b1886c4de3de1d8cb8206\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_a8f2547d0f8b1886c4de3de1d8cb8206\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>The Genetic Mechanisms of Evolution<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_a8f2547d0f8b1886c4de3de1d8cb8206\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_a8f2547d0f8b1886c4de3de1d8cb8206\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch4_PopGenEnv_FINAL.pdf\">Chapter 4. The Population-Genetic Environment<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch5_PopulationGenetics_FINAL.pdf\">Chapter 5. Evolution as a Population-Genetic Process<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch6_ComplexAdaptations_FINAL.pdf\">Chapter 6. Evolution of Cellular Complexity<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div>\n\n<div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_2c1f2e11dce1ac6d07741de8702e82ce\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_2c1f2e11dce1ac6d07741de8702e82ce\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_2c1f2e11dce1ac6d07741de8702e82ce\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_2c1f2e11dce1ac6d07741de8702e82ce\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>Basic Cellular Features<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_2c1f2e11dce1ac6d07741de8702e82ce\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_2c1f2e11dce1ac6d07741de8702e82ce\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch7_CellularEnvironment_FINAL.pdf\">Chapter 7. The Cellular Environment<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch8_GrowthScaling.pdf\">Chapter 8. Evolutionary Scaling Laws in Cell Biology<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch9_CellGrowth_FINAL.pdf\">Chapter 9. Cell Growth and Division<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch10_CellLifeCycle_FINAL.pdf\">Chapter 10. The Cell Life Cycle<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch11_Senescence_FINAL.pdf\">Chapter 11. Cellular Senescence<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div>\n\n<div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_485101e94d496a0f3ee615fc2ad4e107\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_485101e94d496a0f3ee615fc2ad4e107\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_485101e94d496a0f3ee615fc2ad4e107\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_485101e94d496a0f3ee615fc2ad4e107\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>Structural Evolution<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_485101e94d496a0f3ee615fc2ad4e107\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_485101e94d496a0f3ee615fc2ad4e107\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch12_ProteinWorld_FINAL.pdf\">Chapter 12. The Protein World<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch13_Oligomerization.pdf\">Chapter 13. Multimerization<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch14_ProteinManagement_FINAL.pdf\">Chapter 14. Protein Management<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch15_LipidWorld_FINAL.pdf\">Chapter 15. Lipids and Membranes<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch16_Cytoskelton_FINAL.pdf\">Chapter 16. Cytoskeleton, Cell Shape, and Motility<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div>\n\n<div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_c19a6ea06488986fb861f5f88ef68b00\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_c19a6ea06488986fb861f5f88ef68b00\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_c19a6ea06488986fb861f5f88ef68b00\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_c19a6ea06488986fb861f5f88ef68b00\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>Energetics and Metabolism<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_c19a6ea06488986fb861f5f88ef68b00\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_c19a6ea06488986fb861f5f88ef68b00\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch17_CellularCosts_FINAL.pdf\">Chapter 17. The Costs of Cellular Features<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch18_Nutrient-Uptake_FINAL.pdf\">Chapter 18. Resource Acquisition and Homeostasis<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch19_Pathways_FINAL.pdf\">Chapter 19. Enzymes and Metabolic Pathways<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div>\n\n<div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_bf4e4a0dfc1b50e99486a3f53b7168b1\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_bf4e4a0dfc1b50e99486a3f53b7168b1\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_bf4e4a0dfc1b50e99486a3f53b7168b1\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_bf4e4a0dfc1b50e99486a3f53b7168b1\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>Information Processing<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_bf4e4a0dfc1b50e99486a3f53b7168b1\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_bf4e4a0dfc1b50e99486a3f53b7168b1\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch20-Surveillance.pdf\">Chapter 20. Intracellular Errors<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch21_Transcription_FINAL.pdf\">Chapter 21. &nbsp;Intracellular Communication: Transcription<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch22_SignalTransduction_FINAL.pdf\">Chapter 22. Environmental Sensing and Extracellular Communication<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div>\n\n<div class=\"card card-foldable mt-3 card-gold \">\n\t\t\t<div class=\"card-header\">\n\t\t\t\t<h4>\n\t\t\t\t\t<a\n\t\t\t\t\t\taria-controls=\"Body_Accordion_block_d96f989407243887edb37022726d983e\"\n\t\t\t\t\t\taria-expanded=\"false\" class=\"collapsed\"\n\t\t\t\t\t\tdata-target=\"#Body_Accordion_block_d96f989407243887edb37022726d983e\"\n\t\t\t\t\t\tdata-toggle=\"collapse\"\n\t\t\t\t\t\thref=\"#Body_Accordion_block_d96f989407243887edb37022726d983e\"\n\t\t\t\t\t\tid=\"Header_Accordion_block_d96f989407243887edb37022726d983e\"\n\t\t\t\t\t\trole=\"button\"\n\t\t\t\t\t><span class=\"card-icon mb-0\"> <i class=\" mr-0\"><\/i>Organismal Complexity<\/span><span class=\"fas fa-chevron-up\" \/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/h4>\n\t\t\t<\/div>\n\t\t\t<div\n\t\t\t\taria-labelledby=\"Header_Accordion_block_d96f989407243887edb37022726d983e\"\n\t\t\t\tclass=\"collapse card-body \"\n\t\t\t\tid=\"Body_Accordion_block_d96f989407243887edb37022726d983e\"\n\t\t\t>\n<div class=\"wp-bootstrap-blocks-container container mb-0\">\n\t\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch23_Endosymbiosis_FINAL.pdf\">Chapter 23. Endosymbiosis<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/wp-content\/uploads\/sites\/23\/2023\/02\/Ch24_Organismal-Complexity_FINAL.pdf\">Chapter 24. Origins of Organismal Complexity<\/a><\/p>\n\n<\/div>\n\n<\/div>\n<\/div><\/div>\n\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity my-10\"\/>\n\n\n\n<h2 class=\"wp-block-heading my-4\">Explore our other&nbsp;publications<\/h2>\n\n\n\n<div class=\"wp-block-group publications is-layout-flow wp-block-group-is-layout-flow\">\n<h4 class=\"wp-block-heading mb-0 pb-1\">Filter your results<\/h4>\n\n\n<form data-sf-form-id='999142' data-is-rtl='0' data-maintain-state='' data-results-url='\/cellular-evolution\/publications\/' data-ajax-url='\/cellular-evolution\/publications\/?sf_data=results' data-ajax-form-url='https:\/\/biodesign.asu.edu\/cellular-evolution\/?sfid=999142&amp;sf_action=get_data&amp;sf_data=form' data-display-result-method='custom' data-use-history-api='1' data-template-loaded='0' data-lang-code='en' data-ajax='1' data-ajax-data-type='html' data-ajax-links-selector='.pagination a' data-ajax-target='#main' data-ajax-pagination-type='normal' data-update-ajax-url='1' 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value=\"review-article\" name=\"_sft_publication_type[]\" id=\"sf-input-a2f725020bc6f1307f3bd6547708a9c7\"><label class=\"sf-label-checkbox\" for=\"sf-input-a2f725020bc6f1307f3bd6547708a9c7\">Review article<\/label><\/li><li class=\"sf-level-0 sf-item-18\" data-sf-count=\"0\" data-sf-depth=\"0\"><input  class=\"sf-input-checkbox\" type=\"checkbox\" value=\"thesis-dissertation\" name=\"_sft_publication_type[]\" id=\"sf-input-f36e45bf8d947ad4ba9bc4f07becbabf\"><label class=\"sf-label-checkbox\" for=\"sf-input-f36e45bf8d947ad4ba9bc4f07becbabf\">Thesis\/Dissertation<\/label><\/li>\t\t<\/ul>\n\t\t<\/li><\/ul><\/form>\n<\/div>\n\n\n<div id=\"publication-block_932d73c76fb01a0af90ff3f911271e99\" class=\"publication-list row position-relative mt-10\">\n\t<div class=\"col-12 mt-2 mb-4\">\n\t\t\t<\/div>\n\t\n\t\t\t\t\t\t\t<div class=\"col-12\">\n\n\t\t\t\t\t<h3><\/h3>\n\t\t\t\t\t<h3>2024<\/h3>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999193\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Brettner, L., Eder, R., Schmidlin, K., &amp; Geiler\u2010Samerotte, K. (2024). An ultra high\u2010throughput, massively multiplexable, single\u2010cell RNA\u2010seq platform in yeasts.\u00a0<i>Yeast, 41<\/i>(4), 242-255.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1002\/yea.3927\">https:\/\/doi.org\/10.1002\/yea.3927<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999222\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Butenko, A., Luke\u0161, J., Speijer, D., &amp; Wideman, J. G. (2024). Mitochondrial genomes revisited: why do different lineages retain different genes?.\u00a0<i>BMC biology<\/i>,\u00a0<i>22<\/i>(1), 15.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1186\/s12915-024-01824-1\">https:\/\/doi.org\/10.1186\/s12915-024-01824-1<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999221\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Padilla, L. F. A., Murray, J. M., &amp; Hu, K. (2024). The initiation and early development of the tubulin-containing cytoskeleton in the human parasite Toxoplasma gondii.\u00a0<i>Molecular Biology of the Cell<\/i>,\u00a0<i>35<\/i>(3), ar37.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1091\/mbc.E23-11-0418\">https:\/\/doi.org\/10.1091\/mbc.E23-11-0418<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999226\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Schmidlin, Apodaca, Newell, Sastokas, &amp; Kinsler. (2024). Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs across hundreds of fluconazole-resistant yeast strains. <em>eLife<\/em>, <em>13<\/em>, RP94144.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.7554\/eLife.94144.1\">https:\/\/doi.org\/10.7554\/eLife.94144.1<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div><hr><h3 class=\"mt-6\">2023<\/h3>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-318\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p><span style=\"font-weight: 400\">Chung, C., Verheijen, B. M., Zhang, X., Huang, B., Coakley, A., McGann, E., Wade, E., Dinep-Schneider, O., LaGosh, J., Anagnostou, M.-E., Simpson, S., Thomas, K., Ernst, M., Rattray, A., Lynch, M., Kashlev, M., Benayoun, B. A., Li, Z., Strathern, J., \u2026 Vermulst, M. (2023). The fidelity of transcription in human cells. <\/span><i><span style=\"font-weight: 400\">Proceedings of the National Academy of Sciences<\/span><\/i><span style=\"font-weight: 400\">, <em>120<\/em>(5).<\/span><\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1073\/pnas.2210038120\">https:\/\/doi.org\/10.1073\/pnas.2210038120<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999215\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Devi, A., Speyer, G., &amp; Lynch, M. (2023). The divergence of mean phenotypes under persistent directional selection.\u00a0<i>Genetics<\/i>,\u00a0<i>224<\/i>(3), iyad091.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1093\/genetics\/iyad091\">https:\/\/doi.org\/10.1093\/genetics\/iyad091<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999227\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Geiler-Samerotte, K., &amp; Lang, G. I. (2023). Best Practices in Microbial Experimental Evolution.\u00a0<i>Journal of Molecular Evolution<\/i>,\u00a0<i>91<\/i>(3), 237-240.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1007\/s00239-023-10119-y\">https:\/\/doi.org\/10.1007\/s00239-023-10119-y<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999213\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Gout, J. F., Hao, Y., Johri, P., Arnaiz, O., Doak, T. G., Bhullar, S., &#8230; &amp; Lynch, M. (2023). Dynamics of gene loss following ancient whole-genome duplication in the cryptic Paramecium complex.\u00a0<i>Molecular biology and evolution<\/i>,\u00a0<i>40<\/i>(5), msad107.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1093\/molbev\/msad107\">https:\/\/doi.org\/10.1093\/molbev\/msad107<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999235\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Hoelzel, A. R., &amp; Lynch, M. (2023). The raw material of evolution.\u00a0<i>Science<\/i>,\u00a0<i>381<\/i>(6661), 942-943.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1126\/science.adk0121\">https:\/\/doi.org\/10.1126\/science.adk0121<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999191\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Kinsler, G., Schmidlin, K., Newell, D., Eder, R., Apodaca, S., Lam, G., &#8230; &amp; Geiler-Samerotte, K. (2023). Extreme sensitivity of fitness to environmental conditions: Lessons from# 1BigBatch.\u00a0<i>Journal of Molecular Evolution<\/i>,\u00a0<i>91<\/i>(3), 293-310.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1007\/s00239-023-10114-3\">https:\/\/doi.org\/10.1007\/s00239-023-10114-3<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999212\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Kucukyildirim, S., Ozdemirel, H. O., &amp; Lynch, M. (2023). 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An account of conserved functions and how biologists use them to integrate cell and evolutionary biology.\u00a0<i>Biology &amp; Philosophy<\/i>,\u00a0<i>38<\/i>(5), 45.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1007\/s10539-023-09933-x\">https:\/\/doi.org\/10.1007\/s10539-023-09933-x<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999218\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Suvorov, V., Saakian, D. B., &amp; Lynch, M. (2023). A solution of the Crow-Kimura evolution model on fluctuating fitness landscape.\u00a0<i>Europhysics Letters<\/i>,\u00a0<i>142<\/i>(5), 57003.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1209\/0295-5075\/acd65b\">https:\/\/doi.org\/10.1209\/0295-5075\/acd65b<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div><hr><h3 class=\"mt-6\">2022<\/h3>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-319\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p><span style=\"font-weight: 400\">Kucukyildirim, S., Ozdemirel, H. O., &amp; Lynch, M. (2022). Similar mutation rates but different mutation spectra in moderate and extremely halophilic archaea. <\/span><i><span style=\"font-weight: 400\">G3 Genes|Genomes|Genetics<\/span><\/i><span style=\"font-weight: 400\">, <\/span><i><span style=\"font-weight: 400\">13<\/span><\/i><span style=\"font-weight: 400\">(3).<\/span><\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1093\/g3journal\/jkac303\">https:\/\/doi.org\/10.1093\/g3journal\/jkac303<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Journal article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-320\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p><span style=\"font-weight: 400\">Lynch, M., Schavemaker, P. E., Licknack, T. J., Hao, Y., &amp; Pezzano, A. (2022). Evolutionary Bioenergetics of ciliates. <\/span><i><span style=\"font-weight: 400\">Journal of Eukaryotic Microbiology<\/span><\/i><span style=\"font-weight: 400\">, <\/span><i><span style=\"font-weight: 400\">69<\/span><\/i><span style=\"font-weight: 400\">(5). <\/span><\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1111\/jeu.12934\">https:\/\/doi.org\/10.1111\/jeu.12934<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Review article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-321\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p><span style=\"font-weight: 400\">Lynch, M., Trickovic, B., &amp; Kempes, C. P. (2022). Evolutionary scaling of maximum growth rate with organism size. <\/span><i><span style=\"font-weight: 400\">Scientific Reports<\/span><\/i><span style=\"font-weight: 400\">, <\/span><i><span style=\"font-weight: 400\">12<\/span><\/i><span style=\"font-weight: 400\">(1).<\/span><\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1038\/s41598-022-23626-7\">https:\/\/doi.org\/10.1038\/s41598-022-23626-7<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Journal article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-322\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p><span style=\"font-weight: 400\">Schavemaker, P. E., &amp; Lynch, M. (2022). Flagellar energy costs across the Tree of Life. <\/span><i><span style=\"font-weight: 400\">eLife<\/span><\/i><span style=\"font-weight: 400\">, <\/span><i><span style=\"font-weight: 400\">11<\/span><\/i><span style=\"font-weight: 400\">.<\/span><\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.7554\/eLife.77266\">https:\/\/doi.org\/10.7554\/eLife.77266<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999192\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Brettner, L., Ho, W. C., Schmidlin, K., Apodaca, S., Eder, R., &amp; Geiler-Samerotte, K. (2022). Challenges and potential solutions for studying the genetic and phenotypic architecture of adaptation in microbes.\u00a0<i>Current opinion in genetics &amp; development<\/i>,\u00a0<i>75<\/i>, 101951.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1016\/j.gde.2022.101951\">https:\/\/doi.org\/10.1016\/j.gde.2022.101951<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999199\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Frasch, W. D., Bukhari, Z. A., &amp; Yanagisawa, S. (2022). F1FO ATP synthase molecular motor mechanisms.\u00a0<i>Frontiers in microbiology<\/i>,\u00a0<i>13<\/i>, 965620.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.3389\/fmicb.2022.965620\">https:\/\/doi.org\/10.3389\/fmicb.2022.965620<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999210\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Harrison, J. F., Biewener, A., Bernhardt, J. R., Burger, J. R., Brown, J. H., Coto, Z. N., &#8230; &amp; Williams, T. M. (2022). White paper: an integrated perspective on the causes of hypometric metabolic scaling in animals.\u00a0<i>Integrative and Comparative Biology<\/i>,\u00a0<i>62<\/i>(5), 1395-1418.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1093\/icb\/icac136\">https:\/\/doi.org\/10.1093\/icb\/icac136<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999209\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Johri, P., Aquadro, C. F., Beaumont, M., Charlesworth, B., Excoffier, L., Eyre-Walker, A., &#8230; &amp; Jensen, J. D. (2022). Recommendations for improving statistical inference in population genomics.\u00a0<i>PLoS biology<\/i>,\u00a0<i>20<\/i>(5), e3001669.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1371\/journal.pbio.3001669\">https:\/\/doi.org\/10.1371\/journal.pbio.3001669<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999207\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Johri, P., Gout, J. F., Doak, T. G., &amp; Lynch, M. (2022). A population-genetic lens into the process of gene loss following whole-genome duplication.\u00a0<i>Molecular biology and evolution<\/i>,\u00a0<i>39<\/i>(6), msac118.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1093\/molbev\/msac118\">https:\/\/doi.org\/10.1093\/molbev\/msac118<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999211\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Lynch, M., Trickovic, B., &amp; Kempes, C. P. (2022). Evolutionary scaling of maximum growth rate with organism size.\u00a0<i>Scientific reports<\/i>,\u00a0<i>12<\/i>(1), 22586.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1038\/s41598-022-23626-7\">https:\/\/doi.org\/10.1038\/s41598-022-23626-7<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999208\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Pan, J., Li, W., Ni, J., Wu, K., Konigsberg, I., Rivera, C. E., &#8230; &amp; Long, H. (2022). Rates of mutations and transcript errors in the foodborne pathogen Salmonella enterica subsp. enterica.\u00a0<i>Molecular biology and evolution<\/i>,\u00a0<i>39<\/i>(4), msac081.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.1093\/molbev\/msac081\">https:\/\/doi.org\/10.1093\/molbev\/msac081<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999197\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Richter, D. J., Berney, C., Strassert, J. F., Poh, Y. P., Herman, E. K., Mu\u00f1oz-G\u00f3mez, S. A., &#8230; &amp; de Vargas, C. (2022). EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes.\u00a0<i>Peer Community Journal<\/i>,\u00a0<i>2<\/i>.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.24072\/pcjournal.173\">https:\/\/doi.org\/10.24072\/pcjournal.173<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div><hr><h3 class=\"mt-6\">2021<\/h3>\t\t\t\t\t\t<div class=\"\" id=\"publication-block_932d73c76fb01a0af90ff3f911271e99-999198\">\n\t\t\t\t\t\t\t<div class=\"d-inline-block align-top mb-2\">\n\t\t\t\t\t\t\t\t<div class=\"publication-citation\">\n\t\t\t\t\t\t\t\t\t<p>Yanagisawa, S., &amp; Frasch, W. D. (2021). pH-dependent 11 F1FO ATP synthase sub-steps reveal insight into the FO torque generating mechanism.\u00a0<i>Elife<\/i>,\u00a0<i>10<\/i>, e70016.<\/p>\n\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<a class=\"align-top mb-2\" href=\"https:\/\/doi.org\/10.7554\/eLife.70016\">https:\/\/doi.org\/10.7554\/eLife.70016<\/a>.\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\n\t\t\t\t\t\t\t\t\t<p>\n\t\t\t\t\t\t\t\t\t\t<i>Research article<\/i>. \t\t\t\t\t\t\t\t\t<\/p>\n\t\t\t\t\t\t\t\t<\/div>\n\n\n\t\t\t\t\t\t\t<\/div>\n\n\t\t\t\t\t\t<\/div>\t\t\t\t\t<hr>\n\t\t\t\t<\/div>\n\t\t\n\t\t<div class=\"col-12 position-absolute\" style=\"top:-35px;\">\n\t\t\t\t\t\t\t<h4>Showing 37 Results\n\t\t\t\t\t\t\t\t\t<\/h4>\n\t\t\t\t\t<\/div>\n\t\n\n\n<\/div>\n\n\t<\/div>\n\n<\/div>\n\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"uds_featured_image":null,"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications - Institute for Mechanisms of Cellular Evolution<\/title>\n<meta name=\"description\" content=\"We have taken on one of the last uncharted fields in evolution: integrating evolutionary biology with cell biology. This sequel to The Origins of Genome Architecture brings evolutionary theory to bear on a diversity of observations on the functional and structural features of cells.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/biodesign.asu.edu\/cellular-evolution\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Institute for Mechanisms of Cellular Evolution\" \/>\n<meta property=\"og:description\" content=\"We have taken on one of the last uncharted fields in evolution: integrating evolutionary biology with cell biology. 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