Publications

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  1. Lawrence RM, Conrad CE, Zatsepin NA, Grant TD, Liu H, James D, Nelson G, Subramanian G, Aquila A, Hunter MS, Liang M, Boutet S, Coe J, Spence JC, Weierstall U, Liu W, Fromme P, Cherezov V, Hogue BG.Serial femtosecond X-ray diffraction of enveloped virus microcrystals. Struct Dyn. 2015 Aug 20;2(4):041720. doi: 10.1063/1.4929410. eCollection 2015 Jul.

  2. Arndt, A.L., Larson, B.J., Venkatagopalan, P. and Hogue, B.G.. Role of coronavirus membrane (M) protein tail charged residues in virus assembly. Journal of Virology (2014) Refereed Articles.

  3. Carrillo, J., Esqueda, A., Faulkner, L.D., Chaplot, N., Daskalova, S.M., Goryll, M., Hogue, B.G.. Structure and Key Amino Acids in the Transmembrane Domain of Coronavirus Envelope (E) Proteins are Important for Ion Channel Activity. Journal of Virology (2014) Refereed Articles.

  4. Carrillo, J., Faulkner, L., Chaplot, N., Daskalova, S.M., Goryll, M., Hogue, B.G.. Properties of coronavirus envelope (E) ion channels. Journal of Virology (2014) Refereed Articles.

  5. Daskalova, S.M., Robida, M.D., Carrillo, J., Borges, C.R., Loskutov, A., Sykes, K.F., Mor, T.S., Fromme, P., Goryll M., Hogue, B.G.. Expression and Purification of Functional Coronavirus Envelope (E) Protein in E.coli. Protein Expression and Purification (2014) Refereed Articles.

  6. Lee, H.-H.; Cherni, I.; Yu, H., Fromme, R.; Doran, J.; Grotjohann, I.; Mittman, M.; Basu, S.; Deb, A.; D?rner, K.; Aquila, A.; Barty, A.; Boutet, S.; Chapman, H.; Doak, R. B.; Hunter, M.; James, D.; Kirian, R.; Kupitz, C.; Lawrence, R.; Liu, H.; Nass, K.;. Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1. International Union of Crystallography Journal (2014) Refereed Articles.

  7. Sotomayor-Castro, Y., Thomas, L.Yi, Shelhamer, R., Hogue, B.G.. Significance of phosphorylated sites on mouse hepatitis coronavirus A59 nucleocapsid proteins. Virology (2014) Refereed Articles.

  8. Venkatagopalan, P., Daskalova, S.M., Epand, R., Epand R. and Hogue, B.G.. Importance of conserved proline residues in coronavirus assembly.. Journal of Virology (2014) Refereed Articles.

  9. Venkatagopalan, P., Daskalova, S.M., Lopez, L.A., Dolezal, K.A., Hogue, B.G.. Coronavirus envelope (E) protein remains at the site of assembly.. Virology (2014) Refereed Articles.

  10. Zhen G, Kessans SA, D?rner K, Lee H-H, Meador LR, Hogue BG, ?Mor TS, and ?Fromme P.. Recombinant expression, purification and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Expression and Purification (2014) Refereed Articles.

  11. Zhen G, Kessans SA, D?rner K, Lee H-H, Meador LR, Hogue BG, Mor TS, Fromme P.. Recombinant expression, purification and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Expression and Purification (2014) Nonrefereed Articles.


2019

  1. Shi Y, Yin K, Tai X, DeMirci H, Hosseinizadeh A, Hogue BG, Li H, Ourmazd A, Schwander P, Vatanyants IA, Yoon CH, Aquila A, Liu H. 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data. IUCrJ 6:331-340. PMCID:PMC6400180, DOI: 10.1107/S2052252519001854

  2. Ayyer K, Morgan AJ, Aquila AA, DeMirci H, Hogue BG, Kirian RA, Xavier PL, Yoon CH, Chapman HN, Barty A. 2019. The low-signal limit of X-ray single particle diffractive imaging. Optics Express. In Press.

  3. Sobolev, E. Zolotarev, S., Andreasson, J., Ayyer, K., Barak, I., Bari, S., Barty, A., Bielecki, J.,  Bobkov, S., Chojnowski G., Ekeberg, T., Fluckiger, L., Gelisio, L., Hogue, B.G.,  Horke, D.A., Hosseinizadeh, Jung, C.,  A., Kim, C., Kim, Y., Kirian, R.A., Kirkwood, H., Kulky, O., Loh, D., Messerschmidt, M., Okamoto, K., Ourmazd, A., Reddy, H.K.N., Rode, A.V., Rose, M., Sellberg, J.A.,  Schubert, R., Schwander, P., Song, C., Teslyuk, A., Timneanu, N., Trebbin, M., Uetrecht, C., Vartanyants, I,, Vyacheslav, I., Xavier, P.L., Williams, G.J., Maia, F. 2019. Megahertz single-particle imaging at European XFEL. Submitted.


2018

  1. Lee, DB, Kim, J-M, Sepl. KJ. Lee. K-H, Jo, JD, Mun, JY, Conrad, C, Coe, J, Nelson, G, Hogue, B, White, TA, Zatsepin, N, Weierstall, U, Barty, A, Chapman, H, Fromme, P, Spence, J, Chung, MS, Oh, C-H, Kim, KH. 2018. Supersaturation controlled microcrystallization and visualization analysis for serial femtosecond crystallography. Nature Sci Reports 8:2541. DOI:10.1038/s41598-018-20899-9.

  2. Wiedorn, MO, Awel, S, Morgan, AJ, Ayyer, K, Gevorkov, Y, Fleckenstein, H, Roth, N, Adriano, L, Bean, R, Beyerlein, KR, Chen, J, Coe, J, Cruz-Mazo, F,  Ekeberg, T, Graceffa, R, Horke, DA, Knoska, J, Mariani, V, Nazari, R, Oberth, D, Samanta, A, Sierra, RG, Stan, CA, Yefanov, O, Rompotis,D, Correa, J, Erk, B, Treusch, R, Schulz, J, Hogue, B, Ganan-Calvo, AM, Fromme, P, Kupper, J, Rode, AV, Bajt, S, Kirian RA, Chapman, HN. 2018. Rapid sample delivery for megahertz serial crystallography at X-ray FELs. IUCrJ. 2018 Jul 27;5(Pt 5):574-584. doi:10.1107/S2052252518008369. eCollection 2018 Sep 1. PMID:30224961

  3. Wiedorn, MO, Awel, S, Morgan, AJ, Ayyer, K, Gevorkov, Y, Fleckenstein, H, Roth, N, Adriano, L, Bean, R, Beyerlein, KR, Chen, J, Coe, J, Cruz-Mazo, F,  Ekeberg, T, Graceffa, R, Horke, DA, Knoska, J, Mariani, V, Nazari, R, Oberth, D, Samanta, A, Sierra, RG, Stan, CA, Yefanov, O, Rompotis,D, Correa, J, Erk, B, Treusch, R, Schulz, J, Hogue, B, Ganan-Calvo, AM, Fromme, P, Kupper, J, Rode, AV, Bajt, S, Kirian RA, Chapman, HN. 2018. Rapid sample delivery for megahertz serial crystallography at X-ray FELs. IUCrJ. 2018 Jul 27;5(Pt 5):574-584. doi:10.1107/S2052252518008369. eCollection 2018 Sep 1. PMID:30224961

  4. Wiedorn, MO, Awel, S, Morgan, AJ, Ayyer, K, Gevorkov, Y, Fleckenstein, H, Roth, N, Adriano, L, Bean, R, Beyerlein, KR, Chen, J, Coe, J, Cruz-Mazo, F,  Ekeberg, T, Graceffa, R, Horke, DA, Knoska, J, Mariani, V, Nazari, R, Oberth, D, Samanta, A, Sierra, RG, Stan, CA, Yefanov, O, Rompotis,D, Correa, J, Erk, B, Treusch, R, Schulz, J, Hogue, B, Ganan-Calvo, AM, Fromme, P, Kupper, J, Rode, AV, Bajt, S, Kirian RA, Chapman, HN. 2018. Rapid sample delivery for megahertz serial crystallography at X-ray FELs. IUCrJ. 2018 Jul 27;5(Pt 5):574-584. doi:10.1107/S2052252518008369. eCollection 2018 Sep 1. PMID:30224961

  5. Rose M, Bobkov S, Ayyer K, Kurta RP, Dzhigaev D, Kim YY, Morgan AJ, Yoon CH, Westphal D, Bielecki J, Sellberg JA, Williams G, Maia FRNC, Yefanov OM, Ilyin V, Mancuso AP, Chapman HN, Hogue BG, Aquila A, Barty A, Vartanyants IA. 2018. Single-particle imaging without symmetry contraints at an X-ray free-electron laser. IUCrJ. 2018 Sep 18;5(Pt 6):727-736. doi: 10.1107/S205225251801120X. eCollection 2018 Nov 1. PMID:30443357


2017

  1. Deb A, Johnson WA, Kline AP, Scott BJ, Meador LR, Srinivas D, Martin-Garcia JM, Dörner K, Borges CR, Misra R, Hogue BG, Fromme P, Mor TS. Bacterial expression, correct membrane targeting and functional folding of the HIV-1 membrane protein Vpu using a periplasmic signal peptide. PLoS One. PLoS One. 2017 Feb 22;12(2):e0172529. doi: 10.1371/journal.pone.0172529.

  2. Li X, Chiu CY, Wang HJ, Kassemeyer S, Botha S, Shoeman RL, Lawrence RM, Kupitz C, Kirian R, James D, Wang D, Nelson G, Messerschmidt M, Boutet S, Williams GJ, Hartmann E, Jafarpour A, Foucar LM, Barty A, Chapman H, Liang M, Menzel A, Wang F, Basu S, Fromme R, Doak RB, Fromme P, Weierstall U, Huang MH, Spence JC, Schlichting I, Hogue BG, Liu H. 2017. Diffraction data of core-shell nanoparticles from an X-ray free electron laser. Sci Data. 2017 Apr 11;4:170048. doi: 10.1038/sdata.2017.48

  3. Reddy HKN, Yoon CH, Aquila A, Awel S, Ayyer K, Barty A, Berntsen P, Bielecki J, Bobkov S, Bucher M, Carini GA, Carron S, Chapman H, Daurer B, DeMirci H, Ekeberg T, Fromme P, Hajdu J, Hanke MF, Hart P, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Kurta RP, Larsson DSD, Duane Loh N, Maia FRNC, Mancuso AP, Mühlig K, Munke A, Nam D, Nettelblad C, Ourmazd A, Rose M, Schwander P, Seibert M, Sellberg JA, Song C, Spence JCH, Svenda M, Van der Schot G, Vartanyants IA, Williams GJ, Xavier PL. 2017. Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source. Sci Data. 2017 Jun 27;4:170079. doi: 10.1038/sdata.2017.

  4. Hosseinizadeh A, Mashayekhi G, Copperman J, Schwander P, Dashti A, Sepehr R, Fung R, Schmidt M, Yoon CH, Hogue BG, Williams GJ, Aquila A, Ourmazd A. 2017 Conformational landscape of a virus by single-particle X-ray scattering. Nat Methods. Sep;14(9):877-881. doi: 10.1038/nmeth.4395. Epub 2017 Aug 14. PMID: 28805793.

  5. Li X, Spence JCH, Hogue BG, Liu H. 2017. Merging single-shot SFEL diffraction data from inorganic nanoparticles: a new approach to size and orientation determination. IUCrJ. 2017 Sep 22;4(Pt 6):741-750. doi: 10.1107/S2052252517012398. eCollection 2017 Nov 1. PMID: 29123676. Corrigendum: 2017 Sci Data 4:170154


2016

  1. Stevenson, H., Lin, G., Barnes, C.O., Sutkeviciute, I., Krzysiak, T., Weiss, S.C., Reynolds, S., Wu, Y., Nagarajan, V., Makhov, A.M., Lawrence, R.,  Lamm, E., Clark, L., Gardella, T.J., Hogue, B.G., Ogata, C., Ahn, J., Gronenborn, A.M., Conway, J.F., Vilardaga, J.P., Cohen, A.E.,  and Calero, G. 2016. Transmission electron microscopy for the evaluation and optimization of crystal growth. Acta Crystallogr D Struct Biol. 72(Pt 5):603-615. Epub 2016 Apr 26. PMID:27139624.

  2. Ding, J., Lawrence, R.M., Jones, P.V., Hogue, B.G., Hayes, M.A. 2016. Concentration of Sindbis virus with optimized gradient insulator-based dielectrophoresis. Analyst PMID: 26878279. DOI: 10.1039/c5an02430g

  3. Kessans, S.A.f, Linhart, M., Meador, L.R., Kilbourne, J. Hogue, B.G., Fromme, P., Matoba, N., Mor, T.S. Immunological characterization of plant-based HIV-1 Gag/Dgp41 virus-like particles. PLOS One. 17;11(3):e0151842. doi: 10.1371/journal.pone.0151842. eCollection 2016. PMID:26986483

  4. Munke, A., Andreasson, J., Aquila, A., Awel, S., Ayyer, K., Barty, A., Bean, R.J., Berntsen, P., Bielecki, J., Boutet, S., Bucher, M., Chapman, H.N., Daurer, B.J., DeMirci, H., Elser, V., Fromme, P., Hajdu, J., Hantke, M.F., Higashiura, A., Hogue, B.G., Hosseinzadeh, A., Kim, Y., Kirian, R.A., Kumar, H., Lan, T.-Y., Larsoon, D.S.D., Liu, H., Loh, N.D., Maia, F.R.N.C., Mancuso, A.P., Muhlig, K., Nakagawa, A., Nam, D., Nelson, G., Nettelblad, C., Okamoto, K., Ourmazd, A., Rose, M., van der Schot, G., Schwander, P., Seibert, M.M., Sellberg, J.A., Sierra, R.G., Song, C., Svenda, M., Timneanu, N., Vartanyants, I.A., Westphal, D., Wiedorn, M.O., Williams, G.J., Xavier, P.L., Yoon, C.H., Zook, J. 2016. Coherent diffraction of single Rice Dwarf Virus particles using hard X-rays at the Linac Coherent Light Source. Nature Scientific Data ug 1;3:160064. doi: 10.1038/sdata.2016.64

  5. Lawrence, R.M., Zook, J.D., Hogue, B.G. Full inactivation of alphaviruses in single particle and crystallized forms. 2016. J. Virol. Methods 236: 237-244.


2015

  1. Venkatagopalan, P., Daskalova, S.M., Lopez, L.A., Dolezal, K.A. and Hogue, B.G. 2015. Coronavirus envelope (E) protein remains at the site of assembly. Virology 478:75-85.

  2. Gong, Z.; Daskalova, S.M.; Craciunescu, F.M.; Song, L.; Martin-Garcia, J.M.; Dörner, K.; Hansen, D.T.; LaBaer, J.; Hogue, B.G.; Mor, T.S.; Fromme, P. 2015. Biophysical Characterization of a Vaccine Candidate against HIV-1: the Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion. PLOS One. 10(8):e0136507; doi: 10.1371/journal.pone.0136507

  3. Lawrence, R.M., Conrad, C.E., Grant, T.D., Zatsepin, N.A., Liu, H., James, D., Nelson, G., Subramanian, G., Aquila, A., Hunter, M.S., Liang, M., Boutet, S., Coe, J., Spence, J.C.H., Weierstall, U., Liu, W., Fromme, P., Cherezov, V., Hogue, B.G. 2015. Serial femtosecond X-ray diffraction of enveloped virus microcrystals. Struct. Dyn. 2, 041720; doi: 10.1063/1.4929410


2014

  1. Lee, H-H, Cherni, I, Yu, HQ,  Fromme, R., Doran, J.D., Grotjohann, I., Basu, S., Dorner. K., Aquila, A., Barty, A., Boutet, S., Chapman, H.N., Doak, R.B., Hunter, M.S., James, D.R., Kirian, R.A., Kupitz, C., Lawrence, R.M., Liu, H., Nass, K., Schlichting, I., Schmidt, K.E., Seibert, M.M., Shoeman, R.L., Spence, J.C.H., Stellato, F., Weierstall, U., Williams, G.J., Yoon, C.H., Wang, D., Zatsepin, N.A., Hogue, B.G., Matoba, N., Fromme, P. Mor T.S. 2014. Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1. International Union of Crystallography Journal doi:10.1107/S2052252514014900. pages 305 – 317.

  2. Gong, Z., Kessans SA, Dörner K, Lee H-H, Meador LR, Hogue B.G., Mor T.S., and Fromme P. 2014. Recombinant expression, purification and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Sci. 23:1607-1618.


2013

  1. Arndt, A.L., Larson, B.J., Venkatagopalan, P. and Hogue, B.G.. Role of coronavirus membrane (M) protein tail charged residues in virus assembly. Journal of Virology (2013) Refereed Articles.

  2. Sotomayor-Castro, Y., Thomas, L.Yi, Shelhamer, R., Hogue, B.G.. Significance of phosphorylated sites on mouse hepatitis coronavirus A59 nucleocapsid proteins. Virology (2013) Refereed Articles.

  3. Venkatagopalan, P., Daskalova, S.M., Epand, R., Epand R. and Hogue, B.G.. Importance of conserved proline residues in coronavirus assembly.. Journal of Virology (2013) Refereed Articles.

  4. Venkatagopalan, P., Daskalova, S.M., Lopez, L.A., Dolezal, K.A., Hogue, B.G.. Coronavirus envelope (E) protein remains at the site of assembly.. Virology (2013) Refereed Articles.


2011

  1. Arndt, A.L., Larson, B.J., Venkatagopalan, P. and Hogue, B.G.. Role of coronavirus membrane (M) protein charged residues in virus assembly. Journal of Virology or Virology (2011) Refereed Articles.

  2. Sotomayor-Castro, Y., Yi, Z., Shelhamer, R., Hogue, B.G.. Significance of phosphorylated sites on mouse hepatitis coronavirus A59 nucleocapsid proteins. Virology (2011) Refereed Articles.

  3. Venkatagopalan, P., Daskalova, S.M. and Hogue, B.G.. Importance of conserved proline residues in coronavirus assembly.. Journal of Virology (2011) Refereed Articles.

  4. Venkatagopalan, P., Lopez, L.A., Daskalova, S.M. and Hogue, B.G.. Coronavirus envelope (E) protein functions at internal membranes.. Virology (2011) Refereed Articles.


2010

  1. Arndt, A.L., Larson, B.J. and Hogue, B.G.. A conserved domain in the coronavirus membrane protein tail is important for virus assembly.. Journal of Virology (2010) Refereed Articles.


2009

  1. Arndt, A.L., Larson, B.J., Altamirano, C.J., Hogue, B.G.. Function of the Coronavirus Membrane Protein Carboxy tail Conserved Domain. Journal of Virology (2009) Refereed Articles.

  2. Burk DR, Senechal-Willis P, Lopez LC, Hogue BG, Daskalova SM. Suppression of lipopolysaccharide-induced inflammatory responses in RAW 264.7 murine macrophages by aqueous extract of Clinopodium vulgare L. (Lamiaceae). J. Ethnopharmacol. (2009) Refereed Articles.

  3. Sotomayor-Castro, Y., Shelhamer, R., Yi, Z., Hogue, B.G.. Functional Characterization of Mouse Hepatitis Coronavirus A59 Nucleocapsid Protein Phosphorylation.. Journal of Virology (2009) Refereed Articles.

  4. Venkatagopalan, P., Hogue, B.G.. Importance of conserved proline residues in coronavirus assembly. Journal of Virology (2009) Refereed Articles.


2008

  1. Lisa Lopez, Ambere Riffle, Steven Pike, Douglas Gardner, Brenda Hogue. Functional requirement of conserved cysteine residues in the coronavirus envelope protein. Journal of Virology (2008) Refereed Articles.

  2. Perlman, Snijder, Gallagher, Hogue, B.G. and Machamer, C.M.. The Nidoviruses. Coronavirus Structural Proteins and Assembly (2008) Book Chapters.


2007

  1. S Verma, L Lopez, Valerie Bednar, Brenda Hogue. Importance of coronavirus membrane protein penultimate charged residue in virus assembly. Journal of Virology (2007) Refereed Articles.

  2. T White, Z Yi, Brenda Hogue. Identification of mouse hepatitis coronavirus nucleocapsid protein phosphorylation sites. Virus Research (2007) Refereed Articles.

  3. Y Ye, Brenda Hogue. Role of the Coronavirus E Viroporin Protein Transmembrane Domain in Virus Assembly. Journal of Virology (2007) Refereed Articles.

  4. Y Ye, K Hauns, J Langland, B Jacobs, Brenda Hogue. Mouse Hepatitis Coronavirus A59 Nucleocapsid Protein is a Type I Interferon Antagonist. Journal of Virology (2007) Refereed Articles.


2006

  1. Perlman, Stanley, Holmes, Kathryn V, Bednar, V,Verma, S,Blount, A,Hogue, Brenda G. The Nidoviruses : Toward the Control of SARS and Other Nidovirus Diseases. Importance of MHV-CoV nucleocapsid protein COOH-termina negative charges (2006) Book Chapters.

  2. Perlman, Stanley, Holmes, Kathryn V, Lopez, L A (Author) ,Jones, A (Author) ,Arndt, W D (Author) ,Hogue, Brenda G (Corresponding Author). The Nidoviruses : The Control of SARS and other Nidovirus Diseases. Subcellular localization of SARS-CoV structural proteins (2006) Book Chapters.

  3. Perlman, Stanley, Holmes, Kathryn V, White, T C (Author) ,Hogue, Brenda G (Corresponding Author). The Nidoviruses : The Control of SARS and other Nidovirus Diseases. Mouse hepatitis coronavirus nucleocapsid phosphorylation (2006) Book Chapters.

  4. Perlman, Stanley, Holmes, Kathryn V, Ye, Y (Author) ,Hogue, Brenda G (Corresponding Author). The Nidoviruses : The Control of SARS and other Nidovirus Diseases. Role of mouse hepatitis coronavirus envelope protein transmembrane domain (2006) Book Chapters.

  5. S Verma, V Bednar, A Blount, Brenda Hogue. Role of coronavirus nucleocapsid protein COOH terminal conserved amino acids in virus assembly. Journal of Virology (2006) Refereed Articles.


2001

  1. Lavi, Ehud, Weiss, Susan R, Hingley, Susan T, Spagnolo, J F (Author) ,Hogue, Brenda G (Author). The Nidoviruses. Requirement of the Poly(A) Tail in Coronavirus Genome Replication (2001) Book Chapters.


2000

  1. Jeannie Spagnolo, Brenda Hogue. Host protein interactions with the 3' end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication. J. Virol (2000) Refereed Articles.

  2. R Cologna, Brenda Hogue. Identification of a bovine coronavirus packaging signal. J. Virol (2000) Refereed Articles.

  3. R Cologna, J Spagnolo, Brenda Hogue. Identification of nucleocapsid binding sites within coronavirus defective genomes. Virology (2000) Refereed Articles.