Lindsay

Lindsay Lab: Publications

2009

  • " Tunnel Conductance of Watson-Crick nucleoside-Base Pairs from Telegraph Noise " Chang S, He J, Lin LS, Zhang PM, Liang F, Young M, Huang S, Lindsay SM, Nanotechnology accepted
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  • " Tunneling readout of hydrogen-bonding based recognition " Chang S, He J, Kibel A, Lee M, Sankey O, Zhang PM, Lindsay SM, Nature Nanotechnology accepted
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  • " Hydrogen bonded electron tunneling circuit reads base composition of DNA oligomers " He J, Lin LS, Zhang PM, Lee M, Sankey O, Lindsay SM, Nanotechnology 20, 075102, 2009


2008

  • " The potential and challenges of nanopore sequencing " Branton D, Deamer DW, Marziali A, Bayley H, Benner SA, et al. Nature Biotechnology 26(10), 1146-1153, 2008
  •               " Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays" Ke, Yonggang ,Lindsay, Stuart, Chang, Yung, Liu, Yan, Yan, Hao, Science (New York, N.Y.). Vol 319. No 5860 (2008) 180-3
  • " An AFM/rotaxane molecular reading head for sequence-dependent DNA structures " Ashcroft BA, Spadola Q, Qamar S, Zhang PM, Kada G, Bension R, Lindsay SM, Small 4(9), 1468-1475, 2008
  • " Charge transport in mesoscopic conducting polymer wires " He J, Forzani ES, Nagahara, LA, Tao NJ, Lindsay SM, J. of Physics-Condensed Matter, 20(37), 374120, 2008
  • " Reduction-induced switching of single-molecule conductance of fullerene derivatives " Morita T, Lindsay SM, J. Phys. Chem. B, 112(34), 10563-10572, 2008
  • " Transverse tunneling through DNA hydrogen bonded to an electrode " He J, Lin LS, Zhang PM, Spadola Q, Xi ZQ, Fu Q, Lindsay SM, Nano Lett. 8(8), 2530-2534, 2008
  • " Genetic sequencing " Bulletin of the Atomic Scientists, Lindsay SM, 64(2), 50, 2008
  • " Can an atomic force microscope sequence DNA using a nanopore? " Qamar S, Williams PM, Lindsay SM, Biophysical J. 94(4), 1233-1240, 2008
  • " Characterization of an antibody scFv that recognizes fibrillar insulin and beta-amyloid using atomic force microscopy " Marcus, Warren D, Wang, Hongda, Lindsay SM, Sierks, Michael R, Nanomedicine 4(1);(2008)  


2007

  • " In vitro selection of histone h4 aptamers for recognition imaging microscopy " Lin, Liyun, Hom, Doris, Lindsay, Stuart M, Chaput, John C, Journal of the American Chemical Society 129(47); 14568-9 (2007)
     
  • " Identification of DNA basepairing via tunnel-current decay" He J, Lin LS, Zhang PM, Lindsay SM, Nano Letts. 7(12); 3854-3858 (2007)
     
  • "Using atomic force microscopy to study chromatin structure and nucleosome remodeling" D. Lohr, R. Bash, H. Wang, J. Yodh, and S.M. Lindsay, Methods, 2007. *41*: 333?341 (2007). Request a Reprint
     
  • "Properties of nucleosomes in acetylated mouse mammary tumor virus versus 5S arrays*" *Solis, F. J., Bash, R., Wang, H., Yodh, J., Lindsay, S., Lohr, D., Biochemistry *46*, 5623-5634 (2007). Request a Reprint
     
  • "Length dependence of charge transport in oligoanilines" He, Jin, Chen, Fan, Lindsay, Stuart, Nuckolls, Colin, Applied Physics Letters *90* 072112-1 to 3 (2007). Request a Reprint
     
  • "Determination of Single Molecule Conductances of Alkanedithiols by Conducting-Atomic Force Microscopy with Large Gold Nanoparticles" T. Morita and S. Lindsay, Journal of the American Chemical Society (Communication) *129*, 7262-7263 (2007). Request a Reprint
     
  • "Tetrameric Structure of Centromeric Nucleosomes in Interphase Drosophila Cells" Yamini Dalal, Hongda Wang, Stuart Lindsay, Steven Henikoff, Public Library of Science, Biology, *5*, e218, 1 to 12 (2007). Request a Reprint
     
  • "Chromatin Control of Gene Expression: The Simplest Model" Stuart Lindsay, Biophysical Journal *92*:1113 (2007). Request a Reprint
     
  • "Molecular Transport Junctions: Clearing Mists" S.M. Lindsay and M.A. Ratner, Advanced Materials, *19* 23-31 (2007). Request a Reprint    


2006

  • "AFM imaging of protein movements: Histone H2A-H2B release during nucleosome remodeling" R. Bash, H. Wang, C. Anderson, J. Yodh, G. Hager, S.M. Lindsay, D. Lohr, FEBS Letters 580 4757-4761 (2006). Request a Reprint

  • "AFM imaging of protein movements: Histone H2A-H2B release during nucleosome remodeling" R. Bash, H. Wang, C. Anderson, J. Yodh, G. Hager, S.M. Lindsay, D. Lohr, FEBS Letters 580 4757-4761 (2006). Request a Reprint
     
  • "Identification and repair of positive binding antibodies containing randomly generated amber codons from synthetic phage display libraries" Marcus WD, Lindsay SM, Sierks MR, Biotechnology Progress 22, 919-922 (2006). Request a Reprint 
     
  • "The Electrochemical Origin of Voltage-Controlled Molecular Conductance Switching" He J, Fu Q, Lindsay SM, Ciszek JW, Tour JM, J. Am. Chem. Soc., 128(46); 14828-14835 (2006) 
     
  • "Conductance of a biomolecular wire" Visoly-Fisher, I.; Daie, K.; Terazono, Y.; Herrero, C.; Fungo, F.; Otero, L.; Durantini, E.; Silber, J. J.; Sereno, L.; Gust, D.; Moore, T. A.; Moore, A. L.; Lindsay, S. M., Proc. Nat. Acad. Sci. 103, 8686?8690 (2006). Request a Reprint
     
  • "Recognition Imaging with a DNA Aptamer" Lin, L.; Wang, H.; Liu, Y.; Yan, H.; Lindsay, S. M., Biophys. J. 90, 4236?4238 (2006). Request a Reprint
     
  • "In situ measurements of oligoaniline conductance: Linking electrochemistry and molecular electronics" Chen, F.; Nuckolls, C.; Lindsay, S. M., Chemical Physics, 324, 236-243 (2006). Request a Reprint
     
  • "Redox-Gated Electron Transport in Electrically Wired Ferrocene Molecules " Xiao XY, Brune D, He J, Lindsay SM, Gorman CB, Tao NJ, Chemical Physics, 326 (1):138-143 (2006).  
  • "Molecular wires and devices: Advances and issues" S.M. Lindsay, Faraday Discussions 131, 403-409. (2006)Request a Reprint
  • "Measuring single molecule conductance with break junctions" J. He, O. Sankey, M. Lee, X. Li, N.J. Tao, and S.M. Lindsay, Faraday Discussions 131, 145-154. (2006) Request a Reprint
     
  • "Conductance of Single Alkanedithiols: Conduction Mechanism and Effect of Molecule-Electrode Contacts" Li, X.; He, J.; Hihath, J.; Xu, B.; Lindsay, S. M.; Tao, N. J. Am. Chem. Soc.; (Article); 128(6); 2135-2141. (2006) Request a Reprint
     
  • "Isolation of an scFv targeting BRG1 using phage display with characterization by AFM" W.D. Marcus, H. Wang, D. Lohr, M.R. Sierks, S.M. Lindsay. Biochemical and Biophysical Research Communications 342 1123-1129. (2006) Request a Reprint  


2005

  • "On the Mechanism of Negative Differential Resistance in Ferrocenylundecanethiol Self-Assembled Monolayers" He, J.; Lindsay, S. M.; J. Am. Chem. Soc.; (Communication); 127(34); 11932-11933. (2005) Request a Reprint
     
  • "Self-assembling molecular pegboard", Lund, K., Y. Liu, S. Lindsay, and H. Yan: J. Am. Chem. Soc. (Communication) 126, 17606-17607 (2005). Request a Reprint
     
  • "Solution AFM Studies of Human Swi-Snf and Its Interactions with MMTV DNA and Chromatin" H. Wang, R. Bash, S. M. Lindsay and D. Lohr, Biophysical Journal 89, 3386-3398 (2005). Request a Reprint
     
  • "Simultaneous Topography and RECognition Mapping with PicoTREC: A Powerful New Technology That Can Be Used To Map Nanometer-Scale Molecular Binding Sites On A Variety Of Surfaces" W. T. Johnson, G. Kada, C. Stroh, H. Gruber, H. Wang, F. Kienberger, A. Ebner, S. Lindsay, and P. Hinterdorfer, NSTI-Nanotech 2, 679-682 (2005). Request a Reprint
     
  • "Single-Molecule Electronic Measurements with Metal Electrodes", S.M. Lindsay, J. Chem. Ed. 82, 727-733 (2005). Request a Reprint
     
  • "Switching of a photochromic molecule on gold electrodes: single-molecule measurements" Jin He, Fan Chen, Paul A. Liddell, Joakim Andreasson, Stephen D. Straight, Devens Gust, Thomas A. Moore, Ana L. Moore, Jun Li, Otto F. Sankey and Stuart M. Lindsay, Nanotechnology 16, 695- 702 (2005). Request a Reprint
     
  • "Electronic Decay Constant of Carotenoid Polyenes from Single-Molecule Measurements" He, J.; Chen, F.; Li, J.; Sankey, O. F.; Terazono, Y.; Herrero, C.; Gust, D.; Moore, T. A.; Moore, A. L.; Lindsay, S. M.; J. Am. Chem. Soc., (Communication), 2005, 127(5), 1384-1385 Request a Reprint
     
  • "A Molecular Switch Based on Potential-Induced Changes of Oxidation State" Fan Chen, Jin He, Colin Nuckolls, Tucker Roberts, Jennifer E. Klare, and Stuart Lindsay, Nano Letters, 5 503-506 (2005). Request a Reprint
     
  • "Localization of Single Avidin-Biotin Interactions Using Simultaneous Topography and Molecular Recognition Imaging" A. Ebner , F. Kienberger , G. Kada , C. M. Stroh, M. Geretschl?ger, A. S. M. Kamruzzahan, L. Wildling , W. T. Johnson , B. Ashcroft , J. Nelson , S. M. Lindsay , H. J. Gruber and P. Hinterdorfer, Chem. Phys. Chem. 6, 897-900 (2005). Request a Reprint
     
  • "Making Contacts to Single Molecules: Are we there yet?" J. Tomfohr, G. Ramachandran, O.F. Sankey and S.M. Lindsay, to be published in Introducing Molecular Electronics, Fagas, G. and Richter, K. (eds.), Springer (Berlin) 2005. Request a Reprint


2004

  • "Single Molecule Electronics" S.M. Lindsay in Interface (journal of the Electrochemical Society) 13, 26-30 (2004). Request a Reprint
     
  • "A Statistical Thermodynamic Model Applied to Experimental AFM Population and Location Data Is Able to Quantify DNA-Histone Binding Strength and Internucleosomal Interaction Differences between Acetylated and Unacetylated Nucleosomal Arrays" F. J. Solis, R. Bash, J. Yodh, S. M. Lindsay, and D. Lohr, Biophys. J. 87 3372-3387 (2004). Request a Reprint
     
  • "Using Atomic Force Microscopy to Study Nucleosome Remodeling on Individual Nucleosomal Arrays in Situ, H. Wang, R. Bash, J. G. Yodh, G. Hager, S. M. Lindsay and D. Lohr, Biophysical Journal 87, 1964-1971 (2004). Request a Reprint
     
  • "Single-molecule recognition imaging microscopy, C. Stroh, H. Wang, R. Bash, B. Ashcroft, J. Nelson, H. Gruber, D. Lohr, S. M. Lindsay, and P. Hinterdorfer, Proc. Natl. Acad. Sci (USA)., 34 12503-12507 (2004). Request a Reprint
     
  • "Calibration of a pH sensitive buried channel silicon-on-insulator MOSFET for sensor applications, B. Ashcroft, B. Takulapalli, J. Yang, G. M. Laws, H. Q. Zhang, N. J. Tao, S. Lindsay, D. Gust, and T. J. Thornton, Phys. Stat. Sol. (b) 241, 2291-2296 (2004). Request a Reprint
     
  • "Self-Assembled Monolayers of TTF Derivatives on Gold: Characterization and Electron Transport Studies, Elba Gomar-Nadal, Ganesh K. Ramachandran, Fan Chen , Timothy Burgin, Jaume Veciana, Concepci? Rovira, David B. Amabilino, and Stuart M. Lindsay, J. Phys. Chem. 108, 7213-7218 (2004). Request a Reprint
     


Older Publications

  • "Comparison of electronic transport measurements on organic molecules" Salomon A., Cahen D., Lindsay S., Tomfohr J., Engelkes V.B., and Frisbie C.D., Advanced Materials 15 1881-1890 (2003). Request a Reprint
     
  • "The Electron Transport Properties of a Carotene Molecule in a Metal-(Single-Molecule)-Metal Junction" Ganesh K. Ramachandran, J. K. Tomfohr, O. F. Sankey, Jun Li, X. Zarate, A. Primak, Y. Terazano, T. A. Moore, A. L. Moore, D. Gust, L. A. Nagahara and S. M. Lindsay, J. Phys. Chem. B, 107, 6162-6169 (2003). Request a Reprint
     
  • "Charge Transfer on the Nanoscale: Current Status" David M. Adams, Louis Brus, Christopher E. D. Chidsey, Stephen Creager, Carol Creutz, Cherie R. Kagan, Prashant V. Kamat, Marya Lieberman, Stuart Lindsay, Rudolph A. Marcus, Robert M. Metzger, M. E. Michel-Beyerle, John R. Miller, Marshall D. Newton, Debra R. Rolison, Otto Sankey, Kirk S. Schanze, James Yardley,and, and Xiaoyang Zhu, J. Phys. Chem. Web Release Date: 24-Jun-2003; Request a Reprint
     
  • "Nuclesomal Arrays can be Salt Reconstituted onto a Single Copy MMTV Promoter DNA Template: Their Properties Differ in Several Ways from those of Comparable 5s Concatemeric Arrays" R. Bash, H. Wang, J.G. Yodh, G.L. Hager, S.M. Lindsay and D. Lohr , Biochemistry 42, 4681-4681 (2003). Request a Reprint
     
  • "A Bond Fluctuation Mechanism for Stochastic Switching in Wired Molecules" G.K. Ramachandran, T.J. Hopson, A.R. Rawlett, L.A. Nagahara, A. Primak and S.M. Lindsay, Science 300, 1413-1415 (2003). Request a Reprint
     
  • "Organic Molecules in an electrical circuit: An AFM study of a negative-differential resistance molecule" G.K. Ramachandran, L.A. Nagahara, R.K. Tsui and S.M. Lindsay, Proc. MRS, in press (2002)
     
  • "Electrical measurements of a dithiolated electronic molecule via conducting atomic force microscopy" A.M. Rawlett, T.J. Hopson, L.A, Nagahara, R.K. Tsui, G.K. Ramachandaran and S.M. Lindsay, Applied Physics Letters 81 3043-3045 (2002). Request a Reprint
     
  • "Glutaraldehyde modified mica: A new surface for atomic force microscopy of chromatin" H. Wang, R. Bash, J.G. Yodh, G.L. Hager, D. Lohr and S.M. Lindsay, Biophysical J.83, 3619-3625 (2002). Request a Reprint
     
  • "Changes in the Electronic Properties of a Molecule when it is wired into a circuit"
    Cui, X.D., Zarate, X., Tomfohr, J., Primak, A., Moore, A.L., Moore, T.A., Gust, D., Harris, G., Sankey, O.F. and Lindsay, S.M., J. Phys. Chem. B 106 8609-8614, 2002. Request a Reprint
     
  • "Single Molecule Electronics and Tunneling in Molecules" S.M. Lindsay, Jap. J. Appl. Phys.41, 4867-4870 (2002).
     
  • "Atomic Force Microscopy Reveals Kinks in the DNA response element DNA" P. Balagurumoorthy, S.M. Lindsay and R.E. Harrington, Biophysical Chemistry 101-102, 611-623 (2002). Request a Reprint
     
  • "Bias-induced forces in conducting atomic force microscopy and contact charging of organic monolayers" X.D. Cui, X. Zarate J. Tomfohr, A. Primak, A. L. Moore, T. A. Moore, D. Gust, G. Harris, O. F. Sankey, and S. M. Lindsay. Ultramicroscopy, 92 67-76 (2002). Request a Reprint
     
  • "Making electrical contacts to molecular monolayers" Cui, X.D., Zarate, X., Tomfohr, J., Primak, A., Moore, A.L., Moore, T.A., Gust, D., Harris, G., Sankey, O.F., Lindsay, S.M., Nanotechnology, 13 5-14 (2002). Request a Reprint
     
  • "Reproducible Measurement of Single-Molecule Conductivity" X. D. Cui, A. Primak, X. Zarate, J. Tomfohr, O. F. Sankey, A. L. Moore, T. A. Moore, D. Gust, G. Harris and S. M. Lindsay, Science 294, 571-574 (2001). Request a Reprint
     
  • "Conformation and Rigidity of DNA Microcircles containing waf1 Response Element for P53 Regulatory Protein" H. Zhou, Y. Zhang, Z.O. Yang, X.Z. Feng, S.M. Lindsay, P. Baalagurumoorthy and R.E. Harrington, J. Mol. Biol. 306, 227-238 (2001). Request a Reprint
     
  • "Single molecule force spectroscopy in biology using the atomic force microscope" Zlatanova J, Lindsay SM, Leuba SH, Prog. Biophys. Mol. Bio. 74: (1-2) 37-61 (2000).
     
  • "Mechanically stretching single chromatin fibers" S.H. Leuba, M.A. Karymov, Y.Z. Liu, S.M. Lindsay and J. Zlatanova, Gene Therapy and Molecular Biology 4, 297-301 (2000)
     
  • "The mechanical properties of single chromatin fibers under tension" S.H. Leuba, J. Zlatanova, M.A. Karymov, R. Bash, Y.Z Liu, D. Lohr, R.E. Harrington and S.M. Lindsay, Single Molecules 1, 185-193 (2000). Request a Reprint
     
  • "Conformational transition in DNA on a cold surface" Feng XZ, Bash R, Balagurumoorthy P, Lohr D, Harrington RE, Lindsay SM, Nucleic Acids Res 15;28(2):593-6, (2000). Request a Reprint
     
  • "Relationship between stiffness and force in single molecule pulling experiments" Y.Z. Liu, S.H. Leuba and S.M. Lindsay, Langmuir; 15; 8547-8548 (1999). Request a Reprint
     
  • "Antibody recognition imaging by force microscopy" A. Raab, W. Han, D. Badt, S.J. Smith-Gill, S.M. Lindsay, H. Schindler and P. Hinterdorfer, Nature Biotechnology 17, 901-5 (1999). Request a Reprint
     
  • "Dynamic Force Microscopy in Fluid" M. Lantz, Y.Z. Liu, X.D. Cui, H. Tokumoto and S.M. Lindsay, Surface and Interface Analysis 27, 354-360 (1999). Request a Reprint
     
  • "Carotene as a Molecular Wire: Conducting Atomic Force Microscopy" G. Leatherman, E.N. Durantini, D. Gust, T.A. Moore, A.L. Moore, S. Stone, Z. Zhou P. Rez Y.Z. Liu and S.M. Lindsay, Journal of Physical Chemistry B 103 4006-4010 (1999). Request a Reprint
     
  • "Probing Molecular Ordering at a Liquid-Solid Interface with a Magnetically Oscillated Atomic Force Microscope" W. Han and S.M. Lindsay, Applied Physics Letters 72 1656-1658 (1998). Request a Reprint
     
  • "STM Contrast, Electron Transfer Chemistry and Conduction in Molecules" W. Han, E.N. Durantini, T.A. Moore, A.L. Moore, D. Gust, P. Rez, G. Leatherman, G.R. Sealey, N.J. Tao and S.M. Lindsay, J. Phys. Chem. 101 10719-10725 (1997). Request a Reprint
     
  • "Strained DNA is kinked by low concentrations of Zn2+" W. Han, M. Dlakic, Y. Zhu, S.M. Lindsay and R.E. Harrington. Proc. Natl. Acad. Sci. (USA) 94 10565-10570 (1997). Request a Reprint
     
  • "Kinked DNA" W. Han, S.M. Lindsay, M. Dlakic and R.E. Harrington, Nature 386, 563-564 (1997).Request a Reprint
     
  • "A magnetically driven oscillating probe microscope for operation in liquids " W. Han, S.M. Lindsay and T. Jing, Applied Physics Letters 69, 4111-4113 (1996). Request a Reprint
     
  • "Polymerization of the DNA binding fragment of p53 on DNA: Atomic Force Microscope Study " Y.L. Lyubchenko, L.S. Shlyakhtenko, A. Nagaich, A. Appella, R.E. Harrington and S.M. Lindsay, Scanning 12 455-463 (1998). Request a Reprint
     
  • "Scanning Tunneling Microscopy of Mercapto-Hexyl-Oligonucleotides attached to Gold " D. Rekesh, Y. Lyubchenko, L.S. Shlyakhtenko and S.M. Lindsay, Biophysical Journal 71, 1079 - 1086 (1996).
     
  • "Stable binding of Isocyanoporphyrin Molecules to Au(111): An STM study" W. Han, S. Li, S.M. Lindsay, D. Gust, T.A. Moore and A.L. Moore, Langmuir 12, 5742 - 5744 (1996).
     
  • "Atomic Force Microscopy of Nucleoprotein Complexes" Y.L. Lyubchenko, B.L. Jacobs, S.M. Lindsay and A. Stasiak, Scanning Microscopy 9, 705-727 (1995).
     
  • "Structure and Stability of Cytosine Adlayers on Au(111) - An in-situ STM study" Th. Wandlowski, D. Lampner and S.M. Lindsay, J. Electroanalytical Chemistry 404, 215-226 (1996).
     
  • "Non-exponential tunneling in water near an electrode" A. Vaught, T.W. Jing, S.M. Lindsay, Chemical Physics Letters 236 306-310 (1995).
     
  • "Structure of three-way DNA junctions 1. Non-planar geometry" L.S. Shlyakhtenko, D. Rekesh, S.M. Lindsay, I. Kutyavin, E. Appella, R.E. Harrington and Y.L. Lyubchenko, J. Biomol. Struct. Dyn. 11, 1175-1189 (1994).
     
  • "Tunneling Barriers in Electrochemical Scanning Tunneling Microscopy" J. Pan, T.W. Jing and S.M. Lindsay, J. Phys. Chem., 98, 4206-4208 (1994).
     
  • "Interpretation of STM Images of Biomolecules" S.M. Lindsay, T.W. Jing, A. Vaught and D. Rekesh, Nanobiology, 3, 17-27 (1994).
     
  • "An atomic force microscopy study of a self-assembeled octadecyl mercaptan monolayer adsorbed on gold (111) under potential control" J. Pan, N.J. Tao and S.M. Lindsay, Langmuir 9, 1556-1560 (1993).
     
  • "Identification of DNA-Cisplatin adducts in a blind trial of in-situ scanning tunneling microscopy" A.M. Jeffrey, T.W. Jing, J.A. DeRose, A. Vaught, D. Rekesh, F-X. Lu and S.M. Lindsay, Nucleic Acids Research 21, 5896-5900 (1993).
     
  • "Structure of hydrated oligonucleotides studied by in-situ scanning tunneling microscopy" T.W. Jing. A.M. Jeffrey, J.A. DeRose, Y.L. Lyubchenko, , L.S. Schlyakhtenko, R.E. Harrington, E. Appella, J. Larsen, A. Vaught, D. Rekesh, F-X. Lu and S.M. Lindsay, Proc. Natl. Acad. Sci. (USA) 90, 8934-8938 (1993).
     
  • "A comparative SPM study of the surface morphology of Au films grown from the vapor onto glass, fused silica, and muscovite mica" J.A. DeRose, D.B. Lampner, S.M. Lindsay and N.J. Tao, Journal of Vacuum Science and Technology 11 776-780 (1993).
     
  • "STM and AFM studies of biomaterials at a liquid-solid interface" S.M. Lindsay, Y.L. Lyubchenko, N.J. Tao, Y.Q. Li, P.I. Oden and J. Pan , Journal of Vacuum Science and Technology 11, 808-815 (1993).
     
  • "Brillouin-scattering study of hyaluronic acid: Dynamic coupling with the water of hydration and phase transitions" S.A. Lee, W.F. Oliver A. Rupprecht, S.M. Lindsay, Physical Review E 47 , 677-683 (1993).
     
  • "Direct measurement of interaction forces between colloidal particles using the scanning force microscope" Y.Q. Li, N.J. Tao, J. Pan, A.A. Garcia and S.M. Lindsay, Langmuir, 9, 637-641 (1993).
     
  • "Atomic force microscopy of DNA and Bacteriophage in air, water and propanol: The role of adhesion forces" Y.L. Lyubchenko, P.I. Oden, D. Lampner, S.M. Lindsay and K.A. Dunker, Nucleic Acids Research 21, 1117-1123 (1993).
     
  • "The Au(111) 23X?3 surface as a test surface for comparing the atomic force and scanning tunneling microscopes" P.I. Oden, N.J. Tao and S.M. Lindsay, Journal of Vacuum Science and Technology, in press (1993).
     
  • "Self Assembly of Molecular Superstructures studied by in situ STM: The DNA bases on Au(111)" N.J. Tao, J.A. DeRose and S.M. Lindsay, Journal of Physical Chemistry 97, 910-919 (1993).
     
  • "Atomic Force Microscopy Imaging of Double Stranded DNA and RNA" Y. Lyubchenko, A.A. Gall, L.S. Shlyakhtenko, R.E. Harrington, B.L. Jacobs, P.I. Oden and S.M. Lindsay, Journal of Biomolecular Structure and Dynamics 10, 589-606 (1992).
     
  • "Atomic Force Microscopy of Reovirus ds-RNA: A routine technique for for length measurements" Y. Lyubchenko, B.L. Jacobs and S.M. Lindsay, Nucleic Acids Research 20, 3983 - 3986 (1992).
     
  • "Measuring the microelastic properties of Biological Material" N.J. Tao, S. M. Lindsay and S. Lees, Biophysical Journal, 63, 1165-1169 (1992).
     
  • "In-situ Scanning Tunneling Microscopy of Iodine and Bromine adsorption on Au(111) under potential control" N.J. Tao and S.M. Lindsay, Journal of Physical Chemistry 96, 5213 - 5217 (1992).
     
  • "Kinetics of a potential induced 23X?3 to 1X1 transition of Au(111) studied by in-situ scanning tunneling microscopy" N.J. Tao and S.M. Lindsay, Surface Science Letters 274, L546-L553 (1992).
     
  • "Atomic Force Microscopy of Long DNA: Imaging in Air and Under Water" Y. Lyubchenko, L. Shlyakhtenko, R.E. Harrington, P.I. Oden and S.M. Lindsay, Proceedings of the National Academy of Science (USA) 90, 2137-2140 (1993).
     
  • "Initial stages of underpotential deposition of Pb on reconstructed and unreconstructed Au(111)" N.J. Tao, J. Pan, Y. Li, P.I. Oden, J.A. DeRose, and S.M. Lindsay, Surface Science Letters 271, L338-L344 (1992).
     
  • "Atomic force and scanning tunneling microscopy observations of whisker crystals and surface modification on evaporated gold films" P.I. Oden, L.A. Nagahara, J. Graham, J. Pan, N.J. Tao, Y. Li, T.G. Thundat, J.A.DeRose and S.M. Lindsay, Ultramicroscopy 42-44, 580-586 (1992).
     
  • "Potentiostatic deposition of DNA for scanning probe microscopy" S.M. Lindsay, N.J. Tao, J.A. DeRose, P.I. Oden, Yu. L. Lyubchenko, R.E. Harrington and L. Shlyakhtenko, Biophysical Journal 61, 1570-1584 (1992).
     
  • "Imaging porphyrin-based molecules on a gold substrate in ambient conditions" D.K. Luttrull, J. Graham, J.A. DeRose, D. Gust, T.A. Moore and S.M. Lindsay, Langmuir 8, 765-768 (1992).
     
  • "Observation of a phase transition in Li- and Na-hyaluronate films" S.A. Lee, W.F. Oliver, Z. Song, A. Rupprecht and S.M. Lindsay, Biopolymers 32, 303-306 (1992).
     
  • "A general method for determination of Brillouin linewidths by correction for instrumental effects and aperture broadening: Application to high pressure diamond anvil cell experiments" W.F. Oliver, C.A. Herbst, S.M. Lindsay and G.H. Wolf, Rev. Sci. Instrum. 63 1884-1895 (1992).
     
  • "High Pressure Viscoelastic Properties and Equation of State of Liquids Derived from Brillouin Data" W.F. Oliver, C.A. Herbst, S.M. Lindsay and G.H. Wolf, Physical Review Letters 67, 2795-2798 (1991).
     
  • "Observations of the 22X?3 Reconstruction of Au(111) under Aqueous Solutions using Scanning Tunneling Microscopy'' N.J. Tao and S.M. Lindsay, Applied Physics 70, 5141-5143 (1991).
     
  • "Polystyrene Latex Spheres as a Size Calibration for the Atomic Force Microscope" Y. Li and S.M. Lindsay, Review of Scientific Instruments 62, 2630-2633 (1991).
     
  • "Gold Grown Epitaxially on Mica: Conditions for Large Area Flat Faces" J.A. DeRose, T. Thundat, L.A. Nagahara and S.M. Lindsay, Surface Science 256, 102-108 (1991).
     
  • "Superperiodic Features Observed on Graphite under Solution with Scanning Tunneling Microscopy" P.I. Oden, T. Thundat, L.A. Nagahara, S.M. Lindsay, G.B. Adams and O.F. Sankey, Surface Science Letters 254, L454-L459 (1991).
     
  • "Studies of the Electrical Properties of Large Molecular Adsorbates" S.M. Lindsay, Y. Li., J. Pan, T. Thundat, L.A. Nagahara, P.I. Oden, J.A. DeRose and U. Knipping, J. Vac. Sci. Technol. B9, 1096-1101 (1991).
     
  • "Electrochemical Deposition of Nucleic Acids for Scanning Probe Microscopy" J.A. DeRose, S.M. Lindsay, L.A. Nagahara, P.I. Oden and T. Thundat, J. Vac. Sci. Technol. B9, 1166-1170 (1991).
     
  • "A Technique for Stable Adhesion of DNA to a Modified Graphite Surface for Imaging by STM" Yu. L. Lyubchenko, S.M. Lindsay, J.A. DeRose and T. Thundat, J. Vac. Sci. Technol. B9, 1288-1290 (1991).
     
  • "Scanning Tunneling Microscopy Investigations of Polysilicon Films under Solution" J.P. Carrejo, T. Thundat, L.A. Nagahara, S.M. Lindsay and A. Majumdar, J. Vac. Sci. Technol. B9, 955-959 (1991).
     
  • "Effects of Network Topology on Low-Temperature Relaxation in Ge-As-Se Glasses, as probed by Persistent Infrared Spectral Hole Burning" S.P. Love, A.J. Seivers, B.L. Halfpap, and S.M. Lindsay, Physical Review Letters 65, 1792-1795 (1990).
     
  • "Can the Scanning Tunneling Microscope Sequence DNA?" S.M. Lindsay and M. Philipp, Genetic Analysis 8, 8-13 (1991).
     
  • "Nanolithography on Semiconductor Surfaces under an Etching Solution" L.A. Nagahara, T. Thundat and S.M. Lindsay, Applied Physics Letters, 57, 270-272 (1990).
     
  • "A Raman Study of Low Frequency Intrahelical Modes in A-, B-, and C-DNA" T. Weidlich, S.M. Lindsay, Qi Rui, A. Rupprecht, W.L. Peticolas and G.A. Thomas, J. Biomolecular Structure and Dynamics, 8, 139-171 (1990).
     
  • "Brillioun Scattering Study of Methanol at High Pressures" S.A. Lee, A. Anderson, S.M. Lindsay and R.C. Hanson, High Pressure Research, 3, 230-232 (1990).
     
  • "Studies of Compact Hard Tissues and Collagen by means of Brillouin Light Scattering" S. Lees, N.J. Tao and S.M. Lindsay, Connective Tissue Research, 24, 187-205 (1990).
     
  • "A Quasielastic Light Scattering Study at the 1q to 2q Transition within the
    Incommensurate phase of Ba2NaNb5O15" W.F. Oliver, J.F. Scott, S.A. Lee and S.M.
    Lindsay, J. Physics: Condensed Matter 2, 2465-2471 (1990).
     
  • "Electrochemical Deposition of Molecular Adsorbates for In Situ Scanning Probe Microscopy" L.A. Nagahara, T. Thundat, P.I. Oden, S.M. Lindsay and R.L. Rill, Ultramicroscpopy 33, 107-116 (1990).
     
  • "Fragility of the Ge-As-Se Glassforming liquids in Relation to Rigidity Percolation and the Kauzmann Paradox" M. Tatsumisago, B.L. Halfpap, J.L. Green, S.M. Lindsay and C.A. Angell, Physical Review Letters 64, 1549-1552 (1990).
     
  • "Low frequency Raman Spectra of Z-DNA" T. Weidlich, S.M. Lindsay, W.L. Peticolas and G.A. Thomas, J. Biomol. Struct. Dynamics 7, 849-858 (1990).
     
  • "Surface Brillouin Scattering from Graphite" S.A. Lee and S.M. Lindsay, Phys. Stat. Sol. B 157, k83 - k86 (1990).
     
  • "Thermally induced changes in electrical and topographical properties of thin gold films'' Q. Bo, M.A. George, I. Sorenson, W.S. Glaunsinger, T. Thundat and S.M. Lindsay, J. Vac. Sci. Technol. A8, 1491-1497 (1990).
     
  • "Modification of Tantalum Surfaces by Scanning Tunneling Microscopy in an Electrochemistry Cell'' T. Thundat, L.A. Nagahara, S.M. Lindsay, M.A. George and W.S. Glausinger, J. Vac. Sci. Technol. A8, 3537-3541 (1990).
     
  • "Electrical, Spectroscopic and Morphological Investigations of Chromium Diffusion through Thin Gold Films'' M.A. George, W.S. Glaunsinger, T. Thundat and S.M. Lindsay, Thin Solid Films, 189, 59-72 (1990).
     
  • "Pressure and Resonance Effects in Scanning Tunneling Microscopy of Molecular Adsorbates'' S.M. Lindsay, O.F. Sankey, Y. Li and C. Herbst, J. Phys. Chem. 94, 4655-4660 (1990).
     
  • "How does the Scanning Tunneling Microscope Image Biopolymers?'' S.M. Lindsay, O.F. Sankey and K.E. Schmidt, Comments on Molecular and Cellular Biophysics, A7, 109-129 (1991).
     
  • "Scanning Tunneling Microscopy studies of semiconductor electrochemistry'' T. Thundat, L.A. Nagahara and S.M. Lindsay, J. Vac. Sci. Technol. A 8, 539-543 (1990).
     
  • "Direct Observation of Bioelectrochemical Processes by Scanning Tunneling Microscopy'' T. Thundat, L.A. Nagahara, P. Oden and S.M. Lindsay, J. Vac. Sci. Technol. A 8, 645-647 (1990).
     
  • "Imaging Biological Polymers in Water'' S.M. Lindsay, EMSA Bulletin, 19:2, 60-64 (1989).
     
  • "Conformational Flexibility in DNA: Ion Mediated Interactions and the Shape of Genes'' S.M. Lindsay, J. Molecular Liquids, 41, 315-325 (1989).
     
  • "Reorientational Relaxation of Water Molecules in LiCl Solution Studied by Depolarized Rayleigh Scattering'' N.J. Tao and S.M. Lindsay, J. Phys. Condens. Matter 1, 8709-8720 (1989).
     
  • "Sequence, Packing and Nanometer Scale Structure in STM Images of Nucleic Acids Under Water'' S.M. Lindsay, L.A. Nagahara, T. Thundat and P. Oden, J. Biomol. Struct. Dyn. 7, 289 - 299 (1989).
     
  • "STM and AFM Images of Nucleosome DNA Under Water'' S.M. Lindsay, L.A. Nagahara, T. Thundat, U. Knipping, R.L. Rill, B. Drake, C.B. Prater, A.L. Weisenhorn, S.A.C. Gould and P.K. Hansma, J. Biomol. Struct. Dyn. 7, 279 - 287 (1989).
     
  • "Preparation and Characterization of STM Tips for Electrochemical Studies'' L. Nagahara, T. Thundat and S.M. Lindsay, Rev. Sci. Instrum. 60, 3128 - 3130 (1989).
     
  • "Images of the DNA double helix in water'' S.M. Lindsay, T. Thundat, L.Nagahara, U. Knipping and R.L. Rill, Science 244, 1063-1064 (1989).
     
  • "Structure of the DNA Hydration Shells Studied by Raman Spectroscopy'' N.J. Tao, S.M. Lindsay and A. Rupprecht, Biopolymers 28, 1019-1030 (1989).
     
  • "Sonic velocities in Bone at 10 GHz Frequencies'' S. Lees, N-J Tao and S.M. Lindsay, Acoustical Imaging 17 (H. Shimzu, N. Chubachi and J. Kushibiki, eds, Plenum, NY, 1989) pp 371-380.
     
  • "A Low Frequency Raman Study of Polynucleotides'' T. Weidlich and S.M. Lindsay, J. Phys. Chem (letters) 92, 6479-6482 (1988).
     
  • "An Investigation of Mercury Adsorption in Thin Gold Films by STM'' M.A. George, T. Thundat, S.M. Lindsay and W.S. Glaunsinger, J. Microsc. 152, 703-713 (1988).
     
  • "Tip Bias Induced Surface Modification on Gold Surfaces'' U. Knipping, T. Thundat, L. Nagahara and S.M. Lindsay, J. Microsc. 152, 145-148 (1988).
     
  • "Adsorbate Deformation as a Contrast Mechanism in STM Images of Biopolymers in an aqueous Environment: Images of the Unstained, Hydrated DNA Double Helix'' S.M. Lindsay, T. Thundat and L. Nagahara, J. Microsc. 152, 213-220 (1988). Request a Reprint
     
  • "Coupling of Acoustic Phonons in LiCl Aqueous Solutions to a Relaxation Mode of the Ionic Hydration Shell, and Observation of Central Peaks in Inelastic Light Scattering'' N.J. Tao and S.M. Lindsay, J. Phys. Chem. letters 92, 5855-5857 (1988).
     
  • "Counterion Effects on the Structure and Dynamics of Solid DNA'' T. Weidlich, S.M. Lindsay, and A. Rupprecht, Phys. Rev. Lett. 61, 1674-1677 (1988).
     
  • "Low Frequency Raman Spectra of DNA: A Comparison between 2 Oligonucleotide Crystals and Highly Crystalline Films of Calf Thymus DNA'' T. Weidlich, S.M. Lindsay, S.A. Lee, N.J. Tao, G.D.Lewen, W.L. Peticolas, G.A. Thomas and A. Rupprecht, J. Phys. Chem. (Letters) 92, 3315-3317 (1988).
     
  • "Images of DNA Fragments in an Aqueous Environment by Scanning Tunneling Microscopy'' B.Barris, U. Knipping, S.M. Lindsay, L. Nagahara and T. Thundat, Biopolymers 27, 1691-1696 (1988).
     
  • "Dynamic Coupling Between DNA and its Primary Hydration Shell Studied by Brillioun Scattering'' N.J. Tao, S.M. Lindsay and A. Rupprecht, Biopolymers 27, 1655-1671 (1988).
     
  • "The Origin of the A to B Transition in DNA Fibers and Films'' S.M. Lindsay, S.A. Lee, J. Powell, T. Weidlich, C. DeMarco, G.D. Lewen, N.J. Tao and A. Rupprecht, Biopolymers 27, 1015-1043 (1988).
     
  • "Imaging DNA Molecules on a Metal Surface Under Water by STM'' S.M. Lindsay and B. Barris, J. Vac. Sci. Technol. A6, 544-547 (1988).
     
  • "The Active Role of the DNA Hydration Shell'' S.M. Lindsay and N.J. Tao, in Structure and Expression: DNA and its Drug Complexes (Eds. M.H. and R.H. Sarma) Adenine, N.Y. 217-227 (1988).
     
  • "Comment on Resonant Microwave Absorption by Dissolved DNA'' S.M. Lindsay and N.J. Tao, Physical Review Letters 59, 518 (1987).
     
  • "A Brillouin Scattering Study of the Hydration of Li- and Na-DNAFilms'' S.A. Lee, S.M. Lindsay, J.W. Powell, T. Weidlich, S.M. Lindsay and A. Rupprecht, Biopolymers 26, 1637-1665 (1987).
     
  • "The Optical Properties of Solid DNA'' T. Weidlich, S.M. Lindsay and A. Rupprecht, Biopolymers 26, 439-454 (1987).
     
  • "The Dynamics of the DNA Hydration Shell at GHz. Frequencies'' N.J. Tao, S.M. Lindsay and A. Rupprecht, Biopolymers 26, 171-188 (1987). Request a Reprint
     
  • "Rigidity Percolation in the GexAsySe1-x-y Alloy System'' B. Halfpap and
    S.M. Lindsay, Phys. Rev. Lett. 57, 847-849 (1986).
     
  • "Elastic and Photoelastic Anisotropy of Solid HF at High Pressure" S.A. Lee, D.A. Pinnick, S.M. Lindsay and R.C. Hanson, Phys. Rev. B34, 2799-2806 (1986).
     
  • "A Mechanism for the Large Anisotropic Swelling of DNA Films'' G. Lewen, S.M. Lindsay, N.J. Tao, T. Weidlich, R.J. Graham and A.Rupprecht, Biopolymers 25, 765-770 (1985).
     
  • "Brillouin Spectroscopy of Langmuir-Blodgett Films'' R. Zanoni, C. Naselli, J. Bell, G. Stegeman, R. Sprague C. Seaton and S.M. Lindsay, Thin Solid Films 134, 179-186 (1985).
     
  • "Brillouin Studies of Solid HF at High Pressure'' S.A. Lee, D.A. Pinnick, S.M. Lindsay and R.C. Hanson Proceedings of the Second International Conference on Phonon Physics (World Scientific Publishing, Singapore, 1985).
     
  • "Quasi-Elastic Light Scattering from Diamond'' H.E. Jackson, R.T.Harley, S.M. Lindsay and M.W. Anderson, Phys. Rev. Lett. 54, 459-461 (1985).
     
  • "Quasi-Elastic Light Scattering from Silicon and Diamond'', S.M.Lindsay, H.E. Jackson, R.T. Harley and M.W. Anderson, Proc. 17th Intern. Conf. on the Physics of Semiconductors (eds. J.D. Chadi and W.A. Harrison, Springer-Verlag, New York, 1985), p. 1411-1144.
     
  • "Interhelical Effects on the Low Frequency Modes and Phase Transitions of Li- and Na-DNA'', C. DeMarco, S.M. Lindsay, M. Porkorny, J. Powell and A. Rupprecht, Biopolymers 24, 2035--2040 (1985).
     
  • "Observation of Low Lying Raman Bands in DNA by Tandem Interferometry'', S.M. Lindsay, J. Powell and A. Rupprecht, Phys. Rev. Lett. 53, 1853-1855 (1984).
     
  • "Quasi-Elastic Light Scattering in Silicon'', M.W. Anderson, S.M. Lindsay and R.T. Harley, J. Phys. C., 17, 6877-6882 (1984).
     
  • "Brillouin Scattering from Thermal Magnons in a Thin Co Film'', S.P. Vernon, S.M. Lindsay and M.B. Stearns, Phys. Rev. B29, 4439-4442 (1984).
     
  • "The Speed of Sound in DNA'', M. Hakim, S.M. Lindsay and J. Powell, Biopolymers 23, 1185-1192 (1984).
     
  • "Possible Observation of a Defect Resonance in DNA'', S.M. Lindsay and J. Powell, Biopolymers 22, 2045-2060 (1983).
     
  • "Observation of Hypersonic Shear Waves in Poly(methylmethacrylate) and Poly(styrene) by Brillioun Scattering'', S.M. Lindsay, B. Halawith and G.D. Patterson, J. Polymer Sci. (Letters) 20, 583-588 (1982).
     
  • "Injection and Doping Dependence of SEM and Scanning Light Spot Diffusion Length Measurements in Silicon Power Rectifiers'', S.M. Davidson, R.M. Innes and S.M. Lindsay, Solid State Electronics 25, 261-272 (1982).
     
  • "Brillioun Scattering from Polyurethane Gels'', A. Adshead and S.M.Lindsay, Polymer 23, 1884-1888 (1982).
     
  • "The Sublinear Behaviour of Electron Beam and Photo-Induced Currents in a p-n Junction as a Test of Injection Levels'', S.M. Lindsay, S.M. Davidson and R.M. Innes, Phys. Stat. Sol. (b) 107, K9-K12 (1981).
     
  • "Construction and Alignment of a High Performance Multipass Vernier Tandem Fabry-Perot Interferometer'', S.M. Lindsay, M.W. Anderson and J.R. Sandercock, Rev. Sci. Instrum. 52, 1478-1486 (1981).
     
  • "The Hypersonic Loss Process in Polydimethyl Siloxane and the Effects of Crosslinking'', S. M. Lindsay and A. Adshead, Polymer 21, 1355-1358 (1980).
     
  • "Studies of Polymer Dynamics by Multipass Fabry-Perot Spectroscopy'', S. M. Lindsay and I.W. Shepherd, in Advances in Chemistry ser.174, 207-226 (1979).
     
  • "Brillouin Scattering from Oligomers of Poly(dimethylsiloxane) and assignment of the ? Loss Peak in Polymers'', A. Adshead, S.M.Lindsay, C.G. Delides, T.A. King and I.W. Shepherd, Polymer 20, 329-332 (1979).
     
  • "Laser Light Spot Mapping of Depletion in Power SemiconductorDevices'', S.M. Lindsay, Phys. Stat. Sol.(a) 53, 311-320 (1979).
     
  • "Linear Scanning Circuit for a Piezeoelectrically Controlled Fabry-Perot Etalon'', S.M. Lindsay and I.W. Shepherd, Rev. Sci. Instrum. 48, 1228-1229 (1977).
     
  • "Correction of Brillioun Linewidths Measured by Multipass Fabry-Perot Spectroscopy'', S.M. Lindsay, S. Burgess and I.W. Shepherd, Applied Optics 16, 1404-1407 (1977).
     
  • "A High Contrast Multipass Fabry Perot Spectrometer'', S.M. Lindsay and I.W. Shepherd, J. Phys E10, 150-154 (1977).
     
  • "Multiple Hypersonic Relaxations and the ? Transition in Poly(dimethylsiloxane)'', S.M. Lindsay, A. Adshead and I.W. Shepherd, Polymer 18, 862 (1977).
     
  • "Hypersound Propagation in Oriented Poly(methyl methacrylate)'' S.M. Lindsay and I.W. Shepherd, J. Polymer Science, Polymer Symposium 58, 85-96 (1977).
     
  • "Multipass Fabry-Perot Spectroscopy of Polymers'', S.M. Lindsay, A.J. Hartley and I.W. Shepherd, Polymer 17, 501-507 (1976).